(11 nodes) Alpha-catenin/vinculin-like superfamily network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CTNNA3	Catenin alpha 3. (549 aa)
	W5M3Q5_LEPOC	Catenin (cadherin-associated protein), alpha 2. (521 aa)
	W5MAE7_LEPOC	Vinculin a. (1122 aa)
	W5MAG4_LEPOC	Uncharacterized protein. (171 aa)
	ctnnal1	Catenin (cadherin-associated protein), alpha-like 1. (754 aa)
	tln1	Talin 1. (2576 aa)
	ctnna3	Catenin alpha 3. (353 aa)
	W5NII4_LEPOC	Uncharacterized protein. (801 aa)
	tln2	Talin 2a. (2568 aa)
	ctnna1	Catenin (cadherin-associated protein), alpha 1. (908 aa)
	W5M3L6_LEPOC	Catenin (cadherin-associated protein), alpha 2. (366 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTNNA3	W5M3L6_LEPOC	ENSLOCP00000014285	ENSLOCP00000002974	Catenin alpha 3.	Catenin (cadherin-associated protein), alpha 2.	0.899
CTNNA3	W5MAE7_LEPOC	ENSLOCP00000014285	ENSLOCP00000005356	Catenin alpha 3.	Vinculin a.	0.816
CTNNA3	W5MAG4_LEPOC	ENSLOCP00000014285	ENSLOCP00000005373	Catenin alpha 3.	Uncharacterized protein.	0.816
CTNNA3	ctnna3	ENSLOCP00000014285	ENSLOCP00000014271	Catenin alpha 3.	Catenin alpha 3.	0.921
CTNNA3	tln1	ENSLOCP00000014285	ENSLOCP00000013479	Catenin alpha 3.	Talin 1.	0.777
CTNNA3	tln2	ENSLOCP00000014285	ENSLOCP00000018164	Catenin alpha 3.	Talin 2a.	0.777
W5M3L6_LEPOC	CTNNA3	ENSLOCP00000002974	ENSLOCP00000014285	Catenin (cadherin-associated protein), alpha 2.	Catenin alpha 3.	0.899
W5M3L6_LEPOC	W5M3Q5_LEPOC	ENSLOCP00000002974	ENSLOCP00000003013	Catenin (cadherin-associated protein), alpha 2.	Catenin (cadherin-associated protein), alpha 2.	0.952
W5M3L6_LEPOC	W5MAE7_LEPOC	ENSLOCP00000002974	ENSLOCP00000005356	Catenin (cadherin-associated protein), alpha 2.	Vinculin a.	0.836
W5M3L6_LEPOC	W5MAG4_LEPOC	ENSLOCP00000002974	ENSLOCP00000005373	Catenin (cadherin-associated protein), alpha 2.	Uncharacterized protein.	0.836
W5M3L6_LEPOC	W5NII4_LEPOC	ENSLOCP00000002974	ENSLOCP00000020443	Catenin (cadherin-associated protein), alpha 2.	Uncharacterized protein.	0.540
W5M3L6_LEPOC	ctnna1	ENSLOCP00000002974	ENSLOCP00000014576	Catenin (cadherin-associated protein), alpha 2.	Catenin (cadherin-associated protein), alpha 1.	0.544
W5M3L6_LEPOC	tln1	ENSLOCP00000002974	ENSLOCP00000013479	Catenin (cadherin-associated protein), alpha 2.	Talin 1.	0.777
W5M3L6_LEPOC	tln2	ENSLOCP00000002974	ENSLOCP00000018164	Catenin (cadherin-associated protein), alpha 2.	Talin 2a.	0.777
W5M3Q5_LEPOC	W5M3L6_LEPOC	ENSLOCP00000003013	ENSLOCP00000002974	Catenin (cadherin-associated protein), alpha 2.	Catenin (cadherin-associated protein), alpha 2.	0.952
W5M3Q5_LEPOC	W5MAE7_LEPOC	ENSLOCP00000003013	ENSLOCP00000005356	Catenin (cadherin-associated protein), alpha 2.	Vinculin a.	0.836
W5M3Q5_LEPOC	W5MAG4_LEPOC	ENSLOCP00000003013	ENSLOCP00000005373	Catenin (cadherin-associated protein), alpha 2.	Uncharacterized protein.	0.836
W5M3Q5_LEPOC	W5NII4_LEPOC	ENSLOCP00000003013	ENSLOCP00000020443	Catenin (cadherin-associated protein), alpha 2.	Uncharacterized protein.	0.540
W5M3Q5_LEPOC	ctnna1	ENSLOCP00000003013	ENSLOCP00000014576	Catenin (cadherin-associated protein), alpha 2.	Catenin (cadherin-associated protein), alpha 1.	0.543
W5M3Q5_LEPOC	ctnna3	ENSLOCP00000003013	ENSLOCP00000014271	Catenin (cadherin-associated protein), alpha 2.	Catenin alpha 3.	0.917