(18 nodes) Zinc finger, ZZ-type superfamily network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	kcmf1	Potassium channel modulatory factor 1. (386 aa)
	W5NHN3_LEPOC	Dystrobrevin. (636 aa)
	utrn	Utrophin; May play a role in anchoring the cytoskeleton to the plasma membrane. (3628 aa)
	drp2	Dystrophin related protein 2. (877 aa)
	W5N2W4_LEPOC	NBR1 autophagy cargo receptor b. (988 aa)
	W5N0P4_LEPOC	E1A binding protein p300 a. (2068 aa)
	sqstm1	Sequestosome 1. (440 aa)
	dytn	Dystrotelin. (668 aa)
	DMD	Dystrophin; May play a role in anchoring the cytoskeleton to the plasma membrane. (3705 aa)
	W5MVP8_LEPOC	Transcriptional adapter. (489 aa)
	zswim2	Zinc finger, SWIM-type containing 2. (625 aa)
	W5MNR1_LEPOC	HECT and RLD domain containing E3 ubiquitin protein ligase 2. (4846 aa)
	mib2	Mindbomb E3 ubiquitin protein ligase 2. (1002 aa)
	W5MGC6_LEPOC	Dystrobrevin, alpha. (748 aa)
	tada2a	Transcriptional adapter. (446 aa)
	zzz3	Zinc finger, ZZ-type containing 3. (882 aa)
	crebbp	CREB binding protein b. (2500 aa)
	zzef1	Zinc finger, ZZ-type with EF hand domain 1. (3031 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DMD	W5MGC6_LEPOC	ENSLOCP00000012540	ENSLOCP00000007435	Dystrophin; May play a role in anchoring the cytoskeleton to the plasma membrane.	Dystrobrevin, alpha.	0.657
DMD	W5NHN3_LEPOC	ENSLOCP00000012540	ENSLOCP00000020142	Dystrophin; May play a role in anchoring the cytoskeleton to the plasma membrane.	Dystrobrevin.	0.646
W5MGC6_LEPOC	DMD	ENSLOCP00000007435	ENSLOCP00000012540	Dystrobrevin, alpha.	Dystrophin; May play a role in anchoring the cytoskeleton to the plasma membrane.	0.657
W5MGC6_LEPOC	drp2	ENSLOCP00000007435	ENSLOCP00000018842	Dystrobrevin, alpha.	Dystrophin related protein 2.	0.646
W5MGC6_LEPOC	dytn	ENSLOCP00000007435	ENSLOCP00000013219	Dystrobrevin, alpha.	Dystrotelin.	0.646
W5MGC6_LEPOC	utrn	ENSLOCP00000007435	ENSLOCP00000019927	Dystrobrevin, alpha.	Utrophin; May play a role in anchoring the cytoskeleton to the plasma membrane.	0.657
W5MNR1_LEPOC	W5N0P4_LEPOC	ENSLOCP00000010020	ENSLOCP00000014203	HECT and RLD domain containing E3 ubiquitin protein ligase 2.	E1A binding protein p300 a.	0.492
W5MNR1_LEPOC	crebbp	ENSLOCP00000010020	ENSLOCP00000003190	HECT and RLD domain containing E3 ubiquitin protein ligase 2.	CREB binding protein b.	0.462
W5MVP8_LEPOC	tada2a	ENSLOCP00000012457	ENSLOCP00000007111	Transcriptional adapter.	Transcriptional adapter.	0.714
W5MVP8_LEPOC	zzz3	ENSLOCP00000012457	ENSLOCP00000004348	Transcriptional adapter.	Zinc finger, ZZ-type containing 3.	0.623
W5N0P4_LEPOC	W5MNR1_LEPOC	ENSLOCP00000014203	ENSLOCP00000010020	E1A binding protein p300 a.	HECT and RLD domain containing E3 ubiquitin protein ligase 2.	0.492
W5N0P4_LEPOC	crebbp	ENSLOCP00000014203	ENSLOCP00000003190	E1A binding protein p300 a.	CREB binding protein b.	0.996
W5N0P4_LEPOC	zzef1	ENSLOCP00000014203	ENSLOCP00000003129	E1A binding protein p300 a.	Zinc finger, ZZ-type with EF hand domain 1.	0.542
W5N2W4_LEPOC	mib2	ENSLOCP00000014973	ENSLOCP00000007625	NBR1 autophagy cargo receptor b.	Mindbomb E3 ubiquitin protein ligase 2.	0.883
W5N2W4_LEPOC	sqstm1	ENSLOCP00000014973	ENSLOCP00000014082	NBR1 autophagy cargo receptor b.	Sequestosome 1.	0.987
W5NHN3_LEPOC	DMD	ENSLOCP00000020142	ENSLOCP00000012540	Dystrobrevin.	Dystrophin; May play a role in anchoring the cytoskeleton to the plasma membrane.	0.646
W5NHN3_LEPOC	drp2	ENSLOCP00000020142	ENSLOCP00000018842	Dystrobrevin.	Dystrophin related protein 2.	0.646
W5NHN3_LEPOC	dytn	ENSLOCP00000020142	ENSLOCP00000013219	Dystrobrevin.	Dystrotelin.	0.646
W5NHN3_LEPOC	utrn	ENSLOCP00000020142	ENSLOCP00000019927	Dystrobrevin.	Utrophin; May play a role in anchoring the cytoskeleton to the plasma membrane.	0.646
crebbp	W5MNR1_LEPOC	ENSLOCP00000003190	ENSLOCP00000010020	CREB binding protein b.	HECT and RLD domain containing E3 ubiquitin protein ligase 2.	0.462