29 items (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5MKH4_LEPOC	Agrin. (1941 aa)
	W5MKE8_LEPOC	NtA domain-containing protein. (160 aa)
	W5M153_LEPOC	Heparan sulfate proteoglycan 2. (2524 aa)
	sdc1	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (408 aa)
	VCAN	Versican. (3413 aa)
	LOC102692597	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family. (327 aa)
	b3gat1	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family. (358 aa)
	sdc2	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (218 aa)
	W5MA22_LEPOC	Chondroitin sulfate proteoglycan 5a. (476 aa)
	W5MBA9_LEPOC	Neurocan b. (1369 aa)
	gpc5	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (567 aa)
	gpc6	Glypican 6b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (562 aa)
	sdc3	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (428 aa)
	LOC102683954	Glypican 5c; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (599 aa)
	gpc1	Glypican 1a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (552 aa)
	xylt1	Xylosyltransferase I. (938 aa)
	b3galt6	Hexosyltransferase. (331 aa)
	LOC102687202	Si:dkey-193c22.2. (2427 aa)
	b3gat2	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family. (305 aa)
	LOC102683252	Decorin; May affect the rate of fibrils formation. (359 aa)
	bgn	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily. (374 aa)
	LOC102695987	Glypican 3; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (411 aa)
	W5ND35_LEPOC	Glypican 4; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (440 aa)
	cspg4	Chondroitin sulfate proteoglycan 4. (2307 aa)
	gpc2	Glypican 2; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (578 aa)
	W5N2U6_LEPOC	Xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I). (270 aa)
	W5MZ48_LEPOC	Xylosyltransferase II. (771 aa)
	W5MN85_LEPOC	Brevican. (1274 aa)
	sdc4	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (209 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102683252	LOC102683954	ENSLOCP00000020241	ENSLOCP00000006828	Decorin; May affect the rate of fibrils formation.	Glypican 5c; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.636
LOC102683252	LOC102687202	ENSLOCP00000020241	ENSLOCP00000008505	Decorin; May affect the rate of fibrils formation.	Si:dkey-193c22.2.	0.498
LOC102683252	LOC102695987	ENSLOCP00000020241	ENSLOCP00000018546	Decorin; May affect the rate of fibrils formation.	Glypican 3; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.636
LOC102683252	VCAN	ENSLOCP00000020241	ENSLOCP00000002328	Decorin; May affect the rate of fibrils formation.	Versican.	0.813
LOC102683252	W5M153_LEPOC	ENSLOCP00000020241	ENSLOCP00000002110	Decorin; May affect the rate of fibrils formation.	Heparan sulfate proteoglycan 2.	0.706
LOC102683252	W5MBA9_LEPOC	ENSLOCP00000020241	ENSLOCP00000005668	Decorin; May affect the rate of fibrils formation.	Neurocan b.	0.447
LOC102683252	W5MKE8_LEPOC	ENSLOCP00000020241	ENSLOCP00000008857	Decorin; May affect the rate of fibrils formation.	NtA domain-containing protein.	0.634
LOC102683252	W5MKH4_LEPOC	ENSLOCP00000020241	ENSLOCP00000008883	Decorin; May affect the rate of fibrils formation.	Agrin.	0.634
LOC102683252	W5MZ48_LEPOC	ENSLOCP00000020241	ENSLOCP00000013657	Decorin; May affect the rate of fibrils formation.	Xylosyltransferase II.	0.537
LOC102683252	W5N2U6_LEPOC	ENSLOCP00000020241	ENSLOCP00000014955	Decorin; May affect the rate of fibrils formation.	Xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I).	0.612
LOC102683252	W5ND35_LEPOC	ENSLOCP00000020241	ENSLOCP00000018544	Decorin; May affect the rate of fibrils formation.	Glypican 4; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.611
LOC102683252	b3galt6	ENSLOCP00000020241	ENSLOCP00000022183	Decorin; May affect the rate of fibrils formation.	Hexosyltransferase.	0.604
LOC102683252	bgn	ENSLOCP00000020241	ENSLOCP00000019097	Decorin; May affect the rate of fibrils formation.	Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.	0.531
LOC102683252	cspg4	ENSLOCP00000020241	ENSLOCP00000017548	Decorin; May affect the rate of fibrils formation.	Chondroitin sulfate proteoglycan 4.	0.697
LOC102683252	gpc1	ENSLOCP00000020241	ENSLOCP00000006853	Decorin; May affect the rate of fibrils formation.	Glypican 1a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.565
LOC102683252	gpc2	ENSLOCP00000020241	ENSLOCP00000016171	Decorin; May affect the rate of fibrils formation.	Glypican 2; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.611
LOC102683252	gpc5	ENSLOCP00000020241	ENSLOCP00000005737	Decorin; May affect the rate of fibrils formation.	Glypican 5a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.636
LOC102683252	gpc6	ENSLOCP00000020241	ENSLOCP00000005812	Decorin; May affect the rate of fibrils formation.	Glypican 6b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.611
LOC102683252	sdc1	ENSLOCP00000020241	ENSLOCP00000021254	Decorin; May affect the rate of fibrils formation.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.829
LOC102683252	sdc2	ENSLOCP00000020241	ENSLOCP00000004049	Decorin; May affect the rate of fibrils formation.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.582