STRINGSTRING
polr2h polr2h SMARCA5 SMARCA5 ddx21 ddx21 W5MSP0_LEPOC W5MSP0_LEPOC rrp8 rrp8 eed eed polr2k polr2k polr1a polr1a sirt1 sirt1 H2AZ1 H2AZ1 TWISTNB TWISTNB W5N0I2_LEPOC W5N0I2_LEPOC W5N0P4_LEPOC W5N0P4_LEPOC H3-3B H3-3B polr2f polr2f EZH1 EZH1 W5N4C5_LEPOC W5N4C5_LEPOC W5N4F3_LEPOC W5N4F3_LEPOC ACTG1 ACTG1 W5N5C2_LEPOC W5N5C2_LEPOC MYO1D MYO1D ezh2 ezh2 W5N8N3_LEPOC W5N8N3_LEPOC suz12 suz12 LOC102684155-2 LOC102684155-2 smarca1 smarca1 W5NC67_LEPOC W5NC67_LEPOC tdg tdg W5NDT6_LEPOC W5NDT6_LEPOC W5NEB7_LEPOC W5NEB7_LEPOC tbp tbp tet3 tet3 dnmt3a dnmt3a taf1a taf1a polr1b polr1b polr1c polr1c W5NJJ7_LEPOC W5NJJ7_LEPOC W5NLL5_LEPOC W5NLL5_LEPOC LOC102699233 LOC102699233 LOC102686492 LOC102686492 LOC102694187 LOC102694187 W5LVT4_LEPOC W5LVT4_LEPOC W5LY98_LEPOC W5LY98_LEPOC rbbp4 rbbp4 LOC102684155 LOC102684155 W5M7S7_LEPOC W5M7S7_LEPOC sf3b1 sf3b1 W5M8I8_LEPOC W5M8I8_LEPOC LOC102689318 LOC102689318 W5MA88_LEPOC W5MA88_LEPOC polr2e polr2e mtf2 mtf2 actb actb sap130 sap130 LOC102682940 LOC102682940 LOC102683145 LOC102683145 myo1g myo1g W5MFJ4_LEPOC W5MFJ4_LEPOC baz2b baz2b phf19 phf19 kat2b kat2b W5MJB3_LEPOC W5MJB3_LEPOC gsk3b gsk3b W5MJK0_LEPOC W5MJK0_LEPOC myo1c myo1c W5MKB1_LEPOC W5MKB1_LEPOC rbbp7 rbbp7 dnmt1 dnmt1 W5MP17_LEPOC W5MP17_LEPOC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polr2hInfo polymerase (RNA) II (DNA directed) polypeptide H. (112 aa)
SMARCA5SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1028 aa)
ddx21DEAD (Asp-Glu-Ala-Asp) box helicase 21. (777 aa)
W5MSP0_LEPOCTet methylcytosine dioxygenase 1. (1347 aa)
rrp8Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (526 aa)
eedEmbryonic ectoderm development. (441 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
polr1aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1712 aa)
sirt1Sirtuin 1. (720 aa)
H2AZ1Histone H2A; Belongs to the histone H2A family. (128 aa)
TWISTNBTWIST neighbor. (332 aa)
W5N0I2_LEPOCSAP30 binding protein. (303 aa)
W5N0P4_LEPOCE1A binding protein p300 a. (2068 aa)
H3-3BHistone H3; Belongs to the histone H3 family. (136 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (130 aa)
EZH1Enhancer of zeste 1 polycomb repressive complex 2 subunit. (768 aa)
W5N4C5_LEPOCHistone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (782 aa)
W5N4F3_LEPOCTet methylcytosine dioxygenase 2. (1906 aa)
ACTG1Uncharacterized protein. (434 aa)
W5N5C2_LEPOCRNA polymerase I subunit E. (418 aa)
MYO1DMyosin ID; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1004 aa)
ezh2Enhancer of zeste 2 polycomb repressive complex 2 subunit. (761 aa)
W5N8N3_LEPOCRibosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (333 aa)
suz12SUZ12 polycomb repressive complex 2 subunit b. (725 aa)
LOC102684155-2Histone H3.3. (136 aa)
smarca1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1. (1038 aa)
W5NC67_LEPOCCD3e molecule, epsilon associated protein. (305 aa)
tdgThymine DNA glycosylase, tandem duplicate 2. (247 aa)
W5NDT6_LEPOCHistone H2A; Belongs to the histone H2A family. (129 aa)
W5NEB7_LEPOCAE binding protein 2. (298 aa)
tbpTATA box binding protein. (313 aa)
tet3Tet methylcytosine dioxygenase 3. (1716 aa)
dnmt3aDNA (cytosine-5-)-methyltransferase 3 alpha b; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (948 aa)
taf1aTATA box binding protein (TBP)-associated factor, RNA polymerase I, A. (450 aa)
polr1bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1135 aa)
polr1cRNA polymerase I and III subunit C. (389 aa)
W5NJJ7_LEPOCTATA box binding protein (Tbp)-associated factor, RNA polymerase I, B. (569 aa)
W5NLL5_LEPOCHistone H2B; Belongs to the histone H2B family. (115 aa)
LOC102699233Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
LOC102686492Histone H2A; Belongs to the histone H2A family. (141 aa)
LOC102694187Histone H2A; Belongs to the histone H2A family. (142 aa)
W5LVT4_LEPOCUncharacterized protein. (118 aa)
W5LY98_LEPOCBromodomain adjacent to zinc finger domain, 1B. (1632 aa)
rbbp4Retinoblastoma binding protein 4. (424 aa)
LOC102684155Histone H3; Belongs to the histone H3 family. (138 aa)
W5M7S7_LEPOCWu:fj64h06. (726 aa)
sf3b1Splicing factor 3b, subunit 1. (1317 aa)
W5M8I8_LEPOCUncharacterized protein. (763 aa)
LOC102689318Excision repair cross-complementation group 6. (1446 aa)
W5MA88_LEPOCMyosin IB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1154 aa)
polr2eRNA polymerase II subunit E. (162 aa)
mtf2Metal response element binding transcription factor 2. (597 aa)
actbActin, beta 1. (377 aa)
sap130Sin3A-associated protein a. (1060 aa)
LOC102682940DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1524 aa)
LOC102683145DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.1; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (831 aa)
myo1gMyosin IG; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1019 aa)
W5MFJ4_LEPOCDEK proto-oncogene. (456 aa)
baz2bBromodomain adjacent to zinc finger domain, 2Ba. (2218 aa)
phf19PHD finger protein 19. (570 aa)
kat2bHistone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily. (796 aa)
W5MJB3_LEPOCMYB binding protein (P160) 1a. (1266 aa)
gsk3bGlycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily. (420 aa)
W5MJK0_LEPOCHistone H2B; Belongs to the histone H2B family. (136 aa)
myo1cMyosin Ic, paralog b; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1054 aa)
W5MKB1_LEPOCBromodomain adjacent to zinc finger domain, 2A. (1914 aa)
rbbp7Retinoblastoma binding protein 4, like. (429 aa)
dnmt1DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1581 aa)
W5MP17_LEPOCJumonji, AT rich interactive domain 2b. (1303 aa)
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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