16 items (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bbs9	Bardet-Biedl syndrome 9. (960 aa)
	W5M3R4_LEPOC	Bardet-Biedl syndrome 1. (507 aa)
	bbs12	Bardet-Biedl syndrome 12. (690 aa)
	bbs7	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. (718 aa)
	bbs2	Bardet-Biedl syndrome 2 protein homolog. (717 aa)
	MCHR1	Melanin concentrating hormone receptor 1. (354 aa)
	bbs5	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family. (342 aa)
	arl6	ADP-ribosylation factor-like 6; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	W5MWM9_LEPOC	Tetratricopeptide repeat domain 8. (477 aa)
	W5N026_LEPOC	Somatostatin receptor 3; Belongs to the G-protein coupled receptor 1 family. (491 aa)
	lztfl1	Leucine zipper transcription factor-like 1. (299 aa)
	LOC102698023	Melanin-concentrating hormone receptor 1a. (360 aa)
	W5NCP5_LEPOC	Bardet-Biedl syndrome 4. (480 aa)
	mkks	McKusick-Kaufman syndrome. (570 aa)
	smo	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (821 aa)
	BBS10	Bardet-Biedl syndrome 10. (724 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS10	W5M3R4_LEPOC	ENSLOCP00000020072	ENSLOCP00000003022	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 1.	0.618
BBS10	W5MWM9_LEPOC	ENSLOCP00000020072	ENSLOCP00000012788	Bardet-Biedl syndrome 10.	Tetratricopeptide repeat domain 8.	0.579
BBS10	W5NCP5_LEPOC	ENSLOCP00000020072	ENSLOCP00000018404	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 4.	0.610
BBS10	bbs12	ENSLOCP00000020072	ENSLOCP00000003332	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 12.	0.874
BBS10	bbs2	ENSLOCP00000020072	ENSLOCP00000009574	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 2 protein homolog.	0.677
BBS10	bbs5	ENSLOCP00000020072	ENSLOCP00000009778	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.	0.573
BBS10	bbs7	ENSLOCP00000020072	ENSLOCP00000003489	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.726
BBS10	bbs9	ENSLOCP00000020072	ENSLOCP00000003012	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 9.	0.672
BBS10	lztfl1	ENSLOCP00000020072	ENSLOCP00000014770	Bardet-Biedl syndrome 10.	Leucine zipper transcription factor-like 1.	0.569
BBS10	mkks	ENSLOCP00000020072	ENSLOCP00000019645	Bardet-Biedl syndrome 10.	McKusick-Kaufman syndrome.	0.756
LOC102698023	W5M3R4_LEPOC	ENSLOCP00000016396	ENSLOCP00000003022	Melanin-concentrating hormone receptor 1a.	Bardet-Biedl syndrome 1.	0.648
LOC102698023	W5MWM9_LEPOC	ENSLOCP00000016396	ENSLOCP00000012788	Melanin-concentrating hormone receptor 1a.	Tetratricopeptide repeat domain 8.	0.514
LOC102698023	W5NCP5_LEPOC	ENSLOCP00000016396	ENSLOCP00000018404	Melanin-concentrating hormone receptor 1a.	Bardet-Biedl syndrome 4.	0.609
LOC102698023	bbs2	ENSLOCP00000016396	ENSLOCP00000009574	Melanin-concentrating hormone receptor 1a.	Bardet-Biedl syndrome 2 protein homolog.	0.626
LOC102698023	bbs5	ENSLOCP00000016396	ENSLOCP00000009778	Melanin-concentrating hormone receptor 1a.	Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.	0.480
LOC102698023	bbs7	ENSLOCP00000016396	ENSLOCP00000003489	Melanin-concentrating hormone receptor 1a.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.586
LOC102698023	bbs9	ENSLOCP00000016396	ENSLOCP00000003012	Melanin-concentrating hormone receptor 1a.	Bardet-Biedl syndrome 9.	0.543
LOC102698023	smo	ENSLOCP00000016396	ENSLOCP00000019665	Melanin-concentrating hormone receptor 1a.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.546
MCHR1	W5M3R4_LEPOC	ENSLOCP00000009754	ENSLOCP00000003022	Melanin concentrating hormone receptor 1.	Bardet-Biedl syndrome 1.	0.648
MCHR1	W5MWM9_LEPOC	ENSLOCP00000009754	ENSLOCP00000012788	Melanin concentrating hormone receptor 1.	Tetratricopeptide repeat domain 8.	0.514