STRINGSTRING
rmi1 rmi1 parp1 parp1 RNF8 RNF8 rhno1 rhno1 W5NIU6_LEPOC W5NIU6_LEPOC RAD51AP1 RAD51AP1 W5NK63_LEPOC W5NK63_LEPOC W5NK64_LEPOC W5NK64_LEPOC babam2 babam2 GEN1 GEN1 W5NLL5_LEPOC W5NLL5_LEPOC LOC102699233 LOC102699233 LOC102686492 LOC102686492 W5LVZ4_LEPOC W5LVZ4_LEPOC W5LWC3_LEPOC W5LWC3_LEPOC W5LWH6_LEPOC W5LWH6_LEPOC W5LWT0_LEPOC W5LWT0_LEPOC W5LXJ3_LEPOC W5LXJ3_LEPOC mus81 mus81 rfc4 rfc4 rfc2 rfc2 chek1 chek1 W5LZC5_LEPOC W5LZC5_LEPOC W5LZK6_LEPOC W5LZK6_LEPOC W5M0D4_LEPOC W5M0D4_LEPOC RBBP8 RBBP8 rad51d rad51d lig3 lig3 uba52 uba52 W5M2L3_LEPOC W5M2L3_LEPOC EME2 EME2 pold3 pold3 pole3 pole3 W5M3S0_LEPOC W5M3S0_LEPOC W5M4D7_LEPOC W5M4D7_LEPOC babam1 babam1 ccna2 ccna2 rpa2 rpa2 rfc5 rfc5 pole4 pole4 ube2i ube2i pole pole CDK2 CDK2 rmi2 rmi2 timeless timeless W5M9K5_LEPOC W5M9K5_LEPOC W5M9S6_LEPOC W5M9S6_LEPOC tdrd3 tdrd3 top3a top3a meiob meiob W5MDS2_LEPOC W5MDS2_LEPOC W5MDZ8_LEPOC W5MDZ8_LEPOC W5MEE1_LEPOC W5MEE1_LEPOC W5MEG4_LEPOC W5MEG4_LEPOC xrcc1 xrcc1 W5MET7_LEPOC W5MET7_LEPOC W5MFP2_LEPOC W5MFP2_LEPOC ube2v2 ube2v2 SPIDR SPIDR rpa1 rpa1 nsd2 nsd2 W5MJK0_LEPOC W5MJK0_LEPOC rad9b rad9b W5ML00_LEPOC W5ML00_LEPOC recql4 recql4 mre11 mre11 atr atr W5MNK3_LEPOC W5MNK3_LEPOC W5MNX2_LEPOC W5MNX2_LEPOC rfc3 rfc3 W5MPI1_LEPOC W5MPI1_LEPOC W5MPK4_LEPOC W5MPK4_LEPOC LOC102685849 LOC102685849 W5MSA1_LEPOC W5MSA1_LEPOC DNA2 DNA2 sumo3 sumo3 pwwp2a pwwp2a RNF168 RNF168 ppp4r2 ppp4r2 W5MUV7_LEPOC W5MUV7_LEPOC W5MW35_LEPOC W5MW35_LEPOC rad50 rad50 parp3 parp3 W5MXW8_LEPOC W5MXW8_LEPOC eme1 eme1 rpa3 rpa3 LOC102683539 LOC102683539 W5MZ98_LEPOC W5MZ98_LEPOC W5N048_LEPOC W5N048_LEPOC pole2 pole2 rad1 rad1 topbp1 topbp1 W5N2Q8_LEPOC W5N2Q8_LEPOC W5N3D9_LEPOC W5N3D9_LEPOC XRCC2 XRCC2 sirt7 sirt7 rad51 rad51 rfc1 rfc1 LOC102696624 LOC102696624 HUS1 HUS1 sumo2 sumo2 exd2 exd2 brcc3 brcc3 W5N8T9_LEPOC W5N8T9_LEPOC W5N8X8_LEPOC W5N8X8_LEPOC W5N933_LEPOC W5N933_LEPOC rad51b rad51b tp53bp1 tp53bp1 blm blm W5ND91_LEPOC W5ND91_LEPOC pold2 pold2 ube2n ube2n W5NEB6_LEPOC W5NEB6_LEPOC rps27a rps27a pcna pcna W5NFE6_LEPOC W5NFE6_LEPOC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rmi1RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (627 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1009 aa)
RNF8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (475 aa)
rhno1RAD9-HUS1-RAD1 interacting nuclear orphan 1. (290 aa)
W5NIU6_LEPOCExonuclease 1. (797 aa)
RAD51AP1RAD51 associated protein 1. (355 aa)
W5NK63_LEPOCUncharacterized protein. (163 aa)
W5NK64_LEPOCUncharacterized protein. (133 aa)
babam2BRISC and BRCA1 A complex member 2. (386 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (461 aa)
W5NLL5_LEPOCHistone H2B; Belongs to the histone H2B family. (115 aa)
LOC102699233Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
LOC102686492Histone H2A; Belongs to the histone H2A family. (141 aa)
W5LVZ4_LEPOCPoly [ADP-ribose] polymerase. (480 aa)
W5LWC3_LEPOCPINIT domain-containing protein. (82 aa)
W5LWH6_LEPOCReverse transcriptase domain-containing protein. (823 aa)
W5LWT0_LEPOCReverse transcriptase domain-containing protein. (604 aa)
W5LXJ3_LEPOCDNA_pol_B domain-containing protein. (97 aa)
mus81MUS81 structure-specific endonuclease subunit. (616 aa)
rfc4Replication factor C (activator 1) 4. (359 aa)
rfc2Replication factor C (activator 1) 2. (358 aa)
chek1Checkpoint kinase 1; Belongs to the protein kinase superfamily. (476 aa)
W5LZC5_LEPOCRAD51 paralog C. (374 aa)
W5LZK6_LEPOCNon-specific serine/threonine protein kinase. (3061 aa)
W5M0D4_LEPOCSMC5-SMC6 complex localization factor 1. (858 aa)
RBBP8Uncharacterized protein. (865 aa)
rad51dDNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily. (336 aa)
lig3DNA ligase. (1001 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (153 aa)
W5M2L3_LEPOCRing finger protein 169. (462 aa)
EME2Essential meiotic structure-specific endonuclease subunit 2. (472 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (473 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (148 aa)
W5M3S0_LEPOCAnkyrin repeat domain 12. (2028 aa)
W5M4D7_LEPOCSLX4 structure-specific endonuclease subunit homolog (S. cerevisiae). (1669 aa)
babam1BRISC and BRCA1 A complex member 1. (347 aa)
ccna2Cyclin A2; Belongs to the cyclin family. (434 aa)
rpa2Replication protein A2. (277 aa)
rfc5Replication factor C (activator 1) 5. (367 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (135 aa)
ube2iUbiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family. (162 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2298 aa)
CDK2Cyclin dependent kinase 2. (252 aa)
rmi2RecQ mediated genome instability 2. (154 aa)
timelessTimeless circadian clock. (1225 aa)
W5M9K5_LEPOCRAD17 checkpoint clamp loader component. (584 aa)
W5M9S6_LEPOCXPGI domain-containing protein. (345 aa)
tdrd3Tudor domain containing 3. (743 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (803 aa)
meiobMethionine sulfoxide reductase B1b. (471 aa)
W5MDS2_LEPOCANK_REP_REGION domain-containing protein. (1588 aa)
W5MDZ8_LEPOCPolymerase (DNA directed) kappa. (839 aa)
W5MEE1_LEPOCPALB2_WD40 domain-containing protein. (122 aa)
W5MEG4_LEPOCUncharacterized protein. (536 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (648 aa)
W5MET7_LEPOCPolymerase (DNA directed), theta. (2592 aa)
W5MFP2_LEPOCProtein inhibitor of activated STAT, 4a. (489 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
SPIDRScaffold protein involved in DNA repair. (961 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
nsd2Nuclear receptor binding SET domain protein 2. (1380 aa)
W5MJK0_LEPOCHistone H2B; Belongs to the histone H2B family. (136 aa)
rad9bRAD9 checkpoint clamp component B. (290 aa)
W5ML00_LEPOCCell division cycle associated 7a. (393 aa)
recql4RecQ helicase-like 4. (1459 aa)
mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (725 aa)
atrATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2649 aa)
W5MNK3_LEPOCTower domain-containing protein. (871 aa)
W5MNX2_LEPOCUncharacterized protein. (298 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
W5MPI1_LEPOCCyclin A1; Belongs to the cyclin family. (401 aa)
W5MPK4_LEPOCTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (151 aa)
LOC102685849Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
W5MSA1_LEPOCRegulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (613 aa)
DNA2DNA replication helicase/nuclease 2. (1397 aa)
sumo3Small ubiquitin-related modifier. (94 aa)
pwwp2aPWWP domain containing 2A. (672 aa)
RNF168E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recrui [...] (463 aa)
ppp4r2Protein phosphatase 4, regulatory subunit 2b. (418 aa)
W5MUV7_LEPOCDNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (348 aa)
W5MW35_LEPOCNibrin. (846 aa)
rad50RAD50 homolog, double strand break repair protein. (1312 aa)
parp3Poly [ADP-ribose] polymerase. (516 aa)
W5MXW8_LEPOCWRN RecQ like helicase. (1464 aa)
eme1Essential meiotic structure-specific endonuclease 1. (590 aa)
rpa3Replication protein A3. (121 aa)
LOC102683539UBIQUITIN_CONJUGAT_2 domain-containing protein. (120 aa)
W5MZ98_LEPOCUBIQUITIN_CONJUGAT_2 domain-containing protein. (66 aa)
W5N048_LEPOCUncharacterized protein. (1423 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
rad1RAD1 homolog (S. pombe). (281 aa)
topbp1DNA topoisomerase II binding protein 1. (1514 aa)
W5N2Q8_LEPOCAbraxas 1, BRCA1 A complex subunit. (411 aa)
W5N3D9_LEPOCUncharacterized protein. (465 aa)
XRCC2X-ray repair cross complementing 2. (285 aa)
sirt7Sirtuin 7. (437 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (341 aa)
rfc1Replication factor C subunit 1. (1204 aa)
LOC102696624Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (264 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (285 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
exd2Exonuclease 3'-5' domain containing 2. (613 aa)
brcc3BRCA1/BRCA2-containing complex, subunit 3. (262 aa)
W5N8T9_LEPOCATR interacting protein. (763 aa)
W5N8X8_LEPOCTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (323 aa)
W5N933_LEPOCReverse transcriptase domain-containing protein. (704 aa)
rad51bRAD51 paralog B. (384 aa)
tp53bp1Tumor protein p53 binding protein, 1. (1964 aa)
blmBLM RecQ like helicase. (1481 aa)
W5ND91_LEPOCUncharacterized protein. (96 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (469 aa)
ube2nUbiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family. (173 aa)
W5NEB6_LEPOCReverse transcriptase domain-containing protein. (596 aa)
rps27aRibosomal protein S27a. (162 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (264 aa)
W5NFE6_LEPOCPolymerase (DNA directed), eta. (645 aa)
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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