STRINGSTRING
rad23a rad23a W5MNA9_LEPOC W5MNA9_LEPOC rfc3 rfc3 bivm bivm LOC102685849 LOC102685849 polr2h polr2h nrde2 nrde2 polr2d polr2d W5MSA1_LEPOC W5MSA1_LEPOC sumo3 sumo3 xpa xpa polr2k polr2k cul4a cul4a RAD23B RAD23B TCEANC TCEANC W5MVA4_LEPOC W5MVA4_LEPOC mnat1 mnat1 usp40 usp40 sumo1 sumo1 chd1l chd1l cops4 cops4 parp3 parp3 kctd2 kctd2 W5MY44_LEPOC W5MY44_LEPOC LOC102695873 LOC102695873 uvssa uvssa rpa3 rpa3 ino80e ino80e LOC102683539 LOC102683539 W5MZ98_LEPOC W5MZ98_LEPOC pole2 pole2 ino80 ino80 aqr aqr polr2f polr2f yy1 yy1 W5N0P4_LEPOC W5N0P4_LEPOC W5LV53_LEPOC W5LV53_LEPOC W5LV61_LEPOC W5LV61_LEPOC W5LVC1_LEPOC W5LVC1_LEPOC LOC107076457 LOC107076457 W5LVZ4_LEPOC W5LVZ4_LEPOC W5LWZ8_LEPOC W5LWZ8_LEPOC W5LXJ3_LEPOC W5LXJ3_LEPOC rfc4 rfc4 rfc2 rfc2 W5LYW4_LEPOC W5LYW4_LEPOC W5M103_LEPOC W5M103_LEPOC W5M148_LEPOC W5M148_LEPOC polr2j polr2j W5M1E5_LEPOC W5M1E5_LEPOC ccnh ccnh cops3 cops3 lig3 lig3 uba52 uba52 W5M2Q0_LEPOC W5M2Q0_LEPOC pold3 pold3 W5M2W8_LEPOC W5M2W8_LEPOC pole3 pole3 LOC102698940 LOC102698940 rpa2 rpa2 polr2c polr2c W5M601_LEPOC W5M601_LEPOC LOC107079691 LOC107079691 rfc5 rfc5 pole4 pole4 LOC102697492 LOC102697492 LOC102693973 LOC102693973 ube2i ube2i usp45 usp45 polr2b polr2b phf3 phf3 rpap3 rpap3 gtf2h5 gtf2h5 parp1 parp1 pcna pcna rps27a rps27a ube2n ube2n W5NDR1_LEPOC W5NDR1_LEPOC cul4b cul4b pold2 pold2 W5ND91_LEPOC W5ND91_LEPOC polr2i polr2i wdr76 wdr76 ruvbl1 ruvbl1 W5NAQ1_LEPOC W5NAQ1_LEPOC actr8 actr8 isy1 isy1 W5N971_LEPOC W5N971_LEPOC polr2a polr2a W5N8N6_LEPOC W5N8N6_LEPOC W5N868_LEPOC W5N868_LEPOC sumo2 sumo2 cops2 cops2 W5N634_LEPOC W5N634_LEPOC COPS6 COPS6 rfc1 rfc1 ACTG1 ACTG1 ino80b ino80b gps1 gps1 pole pole LOC102689318 LOC102689318 mcrs1 mcrs1 LOC102695765 LOC102695765 cops5 cops5 ppp1r42 ppp1r42 polr2e polr2e actb actb W5MBW0_LEPOC W5MBW0_LEPOC ZNF830 ZNF830 meiob meiob ino80c ino80c W5MDK3_LEPOC W5MDK3_LEPOC W5MDZ8_LEPOC W5MDZ8_LEPOC ddb2 ddb2 xrcc1 xrcc1 tcea1 tcea1 gtf2h3 gtf2h3 COPS7B COPS7B W5MFH8_LEPOC W5MFH8_LEPOC ube2v2 ube2v2 cdk7 cdk7 ercc1 ercc1 W5MGN2_LEPOC W5MGN2_LEPOC ACTR5 ACTR5 rpa1 rpa1 LOC107075828 LOC107075828 W5MJA1_LEPOC W5MJA1_LEPOC ercc4 ercc4 W5MM08_LEPOC W5MM08_LEPOC cops7a cops7a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rad23aRAD23 homolog A, nucleotide excision repair protein a. (357 aa)
W5MNA9_LEPOCPre-mRNA processing factor 19. (465 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
bivmBasic, immunoglobulin-like variable motif containing. (512 aa)
LOC102685849Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
polr2hInfo polymerase (RNA) II (DNA directed) polypeptide H. (112 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1159 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
W5MSA1_LEPOCRegulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (613 aa)
sumo3Small ubiquitin-related modifier. (94 aa)
xpaXeroderma pigmentosum, complementation group A. (280 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
cul4aCullin 4A; Belongs to the cullin family. (755 aa)
RAD23BRAD23 homolog B, nucleotide excision repair protein. (382 aa)
TCEANCTranscription elongation factor A N-terminal and central domain containing. (374 aa)
W5MVA4_LEPOCExcision repair cross-complementation group 5. (1082 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (310 aa)
usp40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1241 aa)
sumo1Small ubiquitin-related modifier. (101 aa)
chd1lChromodomain helicase DNA binding protein 1-like. (1001 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (422 aa)
parp3Poly [ADP-ribose] polymerase. (516 aa)
kctd2Potassium channel tetramerization domain containing 2. (259 aa)
W5MY44_LEPOCINO80 complex subunit Db. (1052 aa)
LOC102695873Excision repair cross-complementation group 3. (813 aa)
uvssaUV-stimulated scaffold protein A. (758 aa)
rpa3Replication protein A3. (121 aa)
ino80eINO80 complex subunit E. (242 aa)
LOC102683539UBIQUITIN_CONJUGAT_2 domain-containing protein. (120 aa)
W5MZ98_LEPOCUBIQUITIN_CONJUGAT_2 domain-containing protein. (66 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
ino80INO80 complex ATPase subunit. (1554 aa)
aqrAquarius intron-binding spliceosomal factor. (1463 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (130 aa)
yy1YY1 transcription factor b. (371 aa)
W5N0P4_LEPOCE1A binding protein p300 a. (2068 aa)
W5LV53_LEPOCUncharacterized protein. (149 aa)
W5LV61_LEPOCDamage-specific DNA binding protein 1. (1044 aa)
W5LVC1_LEPOCUncharacterized protein. (168 aa)
LOC107076457Uncharacterized protein. (171 aa)
W5LVZ4_LEPOCPoly [ADP-ribose] polymerase. (480 aa)
W5LWZ8_LEPOCDEAD_2 domain-containing protein. (153 aa)
W5LXJ3_LEPOCDNA_pol_B domain-containing protein. (97 aa)
rfc4Replication factor C (activator 1) 4. (359 aa)
rfc2Replication factor C (activator 1) 2. (358 aa)
W5LYW4_LEPOCNuclear factor related to kappaB binding protein. (1305 aa)
W5M103_LEPOCDNA ligase. (1030 aa)
W5M148_LEPOCCentrin 3. (167 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (132 aa)
W5M1E5_LEPOCPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (134 aa)
ccnhCyclin H; Belongs to the cyclin family. (322 aa)
cops3COP9 signalosome subunit 3. (429 aa)
lig3DNA ligase. (1001 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (153 aa)
W5M2Q0_LEPOCUncharacterized protein. (250 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (473 aa)
W5M2W8_LEPOCSi:ch73-290k24.6. (341 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (148 aa)
LOC102698940Centrin 4. (171 aa)
rpa2Replication protein A2. (277 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
W5M601_LEPOCTranscription elongation factor A (SII) N-terminal and central domain containing 2. (343 aa)
LOC107079691Chemokine (C-C motif) ligand 44. (115 aa)
rfc5Replication factor C (activator 1) 5. (367 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (135 aa)
LOC102697492Transcription elongation factor A (SII), 3. (491 aa)
LOC102693973RAD23 homolog A, nucleotide excision repair protein b. (404 aa)
ube2iUbiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family. (162 aa)
usp45Ubiquitin carboxyl-terminal hydrolase. (822 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1176 aa)
phf3PHD finger protein 3. (1962 aa)
rpap3RNA polymerase II associated protein 3. (669 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1009 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (264 aa)
rps27aRibosomal protein S27a. (162 aa)
ube2nUbiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family. (173 aa)
W5NDR1_LEPOCWW domain binding protein 1. (243 aa)
cul4bCullin 4B; Belongs to the cullin family. (864 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (469 aa)
W5ND91_LEPOCUncharacterized protein. (96 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (518 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (270 aa)
W5NAQ1_LEPOCExcision repair cross-complementation group 2. (760 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (626 aa)
isy1ISY1 splicing factor homolog. (319 aa)
W5N971_LEPOCProtein inhibitor of activated STAT, 1b. (653 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1959 aa)
W5N8N6_LEPOCATPase family AAA domain containing 5a. (1812 aa)
W5N868_LEPOCRing finger protein 111. (985 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
cops2COP9 signalosome subunit 2. (443 aa)
W5N634_LEPOCXeroderma pigmentosum, complementation group C. (927 aa)
COPS6COP9 signalosome subunit 6. (323 aa)
rfc1Replication factor C subunit 1. (1204 aa)
ACTG1Uncharacterized protein. (434 aa)
ino80bINO80 complex subunit B. (329 aa)
gps1G protein pathway suppressor 1. (527 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2298 aa)
LOC102689318Excision repair cross-complementation group 6. (1446 aa)
mcrs1Microspherule protein 1. (469 aa)
LOC102695765General transcription factor IIH subunit. (392 aa)
cops5COP9 signalosome subunit 5. (342 aa)
ppp1r42Protein phosphatase 1, regulatory subunit 42. (344 aa)
polr2eRNA polymerase II subunit E. (162 aa)
actbActin, beta 1. (377 aa)
W5MBW0_LEPOCCOP9 signalosome subunit 8. (198 aa)
ZNF830Zinc finger protein 830. (352 aa)
meiobMethionine sulfoxide reductase B1b. (471 aa)
ino80cINO80 complex subunit C. (219 aa)
W5MDK3_LEPOCTranscription elongation factor A (SII), 2. (360 aa)
W5MDZ8_LEPOCPolymerase (DNA directed) kappa. (839 aa)
ddb2Damage-specific DNA binding protein 2. (506 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (648 aa)
tcea1Transcription elongation factor A (SII), 1. (313 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (301 aa)
COPS7BCOP9 signalosome subunit 7B. (263 aa)
W5MFH8_LEPOCVon Willebrand factor A domain containing 5B2. (1207 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (348 aa)
ercc1Excision repair cross-complementation group 1. (418 aa)
W5MGN2_LEPOCUbiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1129 aa)
ACTR5Actin related protein 5; Belongs to the actin family. (492 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
LOC107075828BSD domain-containing protein. (170 aa)
W5MJA1_LEPOCXPA binding protein 2. (845 aa)
ercc4Excision repair cross-complementation group 4. (637 aa)
W5MM08_LEPOCExcision repair cross-complementation group 8. (393 aa)
cops7aCOP9 constitutive photomorphogenic homolog subunit 7A. (275 aa)
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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