(14 nodes) Transport of nucleotide sugars network (Lepisosteus oculatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5NBD7_LEPOC	Solute carrier family 35 member 2. (413 aa)
	SLC35A4	Solute carrier family 35 member A4. (322 aa)
	SLC35D3	Solute carrier family 35 member D3. (417 aa)
	slc35b3	Solute carrier family 35 member B3. (385 aa)
	slc35d2	Solute carrier family 35 member D2. (345 aa)
	slc35a3	Solute carrier family 35 member A3a. (436 aa)
	W5M0Q3_LEPOC	Uncharacterized protein. (73 aa)
	slc35a5	Solute carrier family 35 member A5. (465 aa)
	slc35a1	Solute carrier family 35 member A1. (337 aa)
	slc35d1	Solute carrier family 35 member D1a. (338 aa)
	slc35b2	Solute carrier family 35 member B2. (437 aa)
	W5MPP4_LEPOC	Si:ch211-248a14.8. (269 aa)
	slc35b4	Solute carrier family 35 member B4. (331 aa)
	slc35c1	Solute carrier family 35 member C1. (349 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SLC35A4	slc35c1	ENSLOCP00000022407	ENSLOCP00000018033	Solute carrier family 35 member A4.	Solute carrier family 35 member C1.	0.425
SLC35D3	slc35b2	ENSLOCP00000021363	ENSLOCP00000020250	Solute carrier family 35 member D3.	Solute carrier family 35 member B2.	0.418
SLC35D3	slc35b3	ENSLOCP00000021363	ENSLOCP00000016275	Solute carrier family 35 member D3.	Solute carrier family 35 member B3.	0.429
SLC35D3	slc35b4	ENSLOCP00000021363	ENSLOCP00000019237	Solute carrier family 35 member D3.	Solute carrier family 35 member B4.	0.502
W5NBD7_LEPOC	slc35c1	ENSLOCP00000017946	ENSLOCP00000018033	Solute carrier family 35 member 2.	Solute carrier family 35 member C1.	0.465
slc35a1	slc35c1	ENSLOCP00000020924	ENSLOCP00000018033	Solute carrier family 35 member A1.	Solute carrier family 35 member C1.	0.425
slc35a3	slc35c1	ENSLOCP00000012498	ENSLOCP00000018033	Solute carrier family 35 member A3a.	Solute carrier family 35 member C1.	0.417
slc35a5	slc35b4	ENSLOCP00000002012	ENSLOCP00000019237	Solute carrier family 35 member A5.	Solute carrier family 35 member B4.	0.534
slc35a5	slc35d1	ENSLOCP00000002012	ENSLOCP00000008536	Solute carrier family 35 member A5.	Solute carrier family 35 member D1a.	0.427
slc35b2	SLC35D3	ENSLOCP00000020250	ENSLOCP00000021363	Solute carrier family 35 member B2.	Solute carrier family 35 member D3.	0.418
slc35b2	slc35b3	ENSLOCP00000020250	ENSLOCP00000016275	Solute carrier family 35 member B2.	Solute carrier family 35 member B3.	0.423
slc35b2	slc35b4	ENSLOCP00000020250	ENSLOCP00000019237	Solute carrier family 35 member B2.	Solute carrier family 35 member B4.	0.586
slc35b2	slc35c1	ENSLOCP00000020250	ENSLOCP00000018033	Solute carrier family 35 member B2.	Solute carrier family 35 member C1.	0.566
slc35b2	slc35d1	ENSLOCP00000020250	ENSLOCP00000008536	Solute carrier family 35 member B2.	Solute carrier family 35 member D1a.	0.593
slc35b3	SLC35D3	ENSLOCP00000016275	ENSLOCP00000021363	Solute carrier family 35 member B3.	Solute carrier family 35 member D3.	0.429
slc35b3	slc35b2	ENSLOCP00000016275	ENSLOCP00000020250	Solute carrier family 35 member B3.	Solute carrier family 35 member B2.	0.423
slc35b3	slc35c1	ENSLOCP00000016275	ENSLOCP00000018033	Solute carrier family 35 member B3.	Solute carrier family 35 member C1.	0.556
slc35b3	slc35d1	ENSLOCP00000016275	ENSLOCP00000008536	Solute carrier family 35 member B3.	Solute carrier family 35 member D1a.	0.402
slc35b4	SLC35D3	ENSLOCP00000019237	ENSLOCP00000021363	Solute carrier family 35 member B4.	Solute carrier family 35 member D3.	0.502
slc35b4	slc35a5	ENSLOCP00000019237	ENSLOCP00000002012	Solute carrier family 35 member B4.	Solute carrier family 35 member A5.	0.534