78 items (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5NNN7_LEPOC	Uncharacterized protein. (159 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (264 aa)
	W5NFE6_LEPOC	Polymerase (DNA directed), eta. (645 aa)
	rps27a	Ribosomal protein S27a. (162 aa)
	W5NFJ7_LEPOC	SprT-like N-terminal domain. (603 aa)
	dtl	Denticleless E3 ubiquitin protein ligase homolog (Drosophila). (667 aa)
	W5NK42_LEPOC	REV3 like, DNA directed polymerase zeta catalytic subunit. (3084 aa)
	LOC107075352	Uncharacterized protein. (564 aa)
	W5NKN9_LEPOC	Uncharacterized protein. (566 aa)
	W5NKQ3_LEPOC	Uncharacterized protein. (556 aa)
	W5LV61_LEPOC	Damage-specific DNA binding protein 1. (1044 aa)
	W5LVM7_LEPOC	Uncharacterized protein. (498 aa)
	W5LXG4_LEPOC	Uncharacterized protein. (473 aa)
	W5LXJ3_LEPOC	DNA_pol_B domain-containing protein. (97 aa)
	rfc4	Replication factor C (activator 1) 4. (359 aa)
	rfc2	Replication factor C (activator 1) 2. (358 aa)
	W5LZ13_LEPOC	B30.2/SPRY domain-containing protein. (338 aa)
	W5LZL8_LEPOC	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1199 aa)
	ufd1	Ubiquitin recognition factor in ER associated degradation 1. (309 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (153 aa)
	pold3	Polymerase (DNA-directed), delta 3, accessory subunit. (473 aa)
	LOC102695848	Uncharacterized protein. (553 aa)
	W5M2X3_LEPOC	Uncharacterized protein. (375 aa)
	LOC102696049	Uncharacterized protein. (353 aa)
	LOC102696250	Bloodthirsty-related gene family, member 12. (541 aa)
	LOC107075354	Uncharacterized protein. (542 aa)
	LOC102696442	B30.2/SPRY domain-containing protein. (337 aa)
	LOC102685691	FinTRIM family, member 82. (571 aa)
	pole3	Polymerase (DNA directed), epsilon 3 (p17 subunit). (148 aa)
	W5M486_LEPOC	B box-type domain-containing protein. (147 aa)
	SPATA5	Spermatogenesis associated 5. (892 aa)
	LOC102683306	Uncharacterized protein. (596 aa)
	W5M549_LEPOC	B30.2/SPRY domain-containing protein. (223 aa)
	rpa2	Replication protein A2. (277 aa)
	W5M5X6_LEPOC	Uncharacterized protein. (242 aa)
	LOC107079691	Chemokine (C-C motif) ligand 44. (115 aa)
	rfc5	Replication factor C (activator 1) 5. (367 aa)
	pole4	Polymerase (DNA-directed), epsilon 4, accessory subunit; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (135 aa)
	poli	Polymerase (DNA directed) iota. (737 aa)
	W5M755_LEPOC	Uncharacterized protein. (545 aa)
	LOC102691795	Uncharacterized protein. (537 aa)
	usp31	Ubiquitin specific peptidase 31; Belongs to the peptidase C19 family. (1308 aa)
	pole	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2298 aa)
	usp10	Ubiquitin carboxyl-terminal hydrolase. (903 aa)
	meiob	Methionine sulfoxide reductase B1b. (471 aa)
	W5MDZ8_LEPOC	Polymerase (DNA directed) kappa. (839 aa)
	mad2l2	Mitotic arrest deficient 2 like 2. (211 aa)
	rpa1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
	usp1	Ubiquitin carboxyl-terminal hydrolase. (808 aa)
	W5MHR4_LEPOC	RING-type domain-containing protein. (343 aa)
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	W5MK20_LEPOC	Uncharacterized protein. (547 aa)
	rfc3	Replication factor C (activator 1) 3. (356 aa)
	LOC102685849	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
	W5MSA1_LEPOC	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (613 aa)
	LOC102682860	Uncharacterized protein. (567 aa)
	cul4a	Cullin 4A; Belongs to the cullin family. (755 aa)
	wdr48	WD repeat domain 48b. (679 aa)
	LOC102684477	Uncharacterized protein. (541 aa)
	W5MUS5_LEPOC	Uncharacterized protein. (547 aa)
	LOC102686545	Zgc:136908; Belongs to the AAA ATPase family. (807 aa)
	rad18	RAD18 E3 ubiquitin protein ligase. (460 aa)
	W5MXQ8_LEPOC	Uncharacterized protein. (698 aa)
	rpa3	Replication protein A3. (121 aa)
	pole2	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
	rchy1	Ring finger and CHY zinc finger domain containing 1. (270 aa)
	nploc4	NPL4 homolog, ubiquitin recognition factor. (616 aa)
	rfc1	Replication factor C subunit 1. (1204 aa)
	spata5l1	Spermatogenesis associated 5-like 1. (771 aa)
	usp43	Ubiquitin specific peptidase 43b; Belongs to the peptidase C19 family. (1188 aa)
	W5N8N6_LEPOC	ATPase family AAA domain containing 5a. (1812 aa)
	LOC102686523	Uncharacterized protein. (570 aa)
	W5NAP0_LEPOC	Uncharacterized protein. (575 aa)
	W5NBG3_LEPOC	Uncharacterized protein. (561 aa)
	LOC102698197	Si:dkey-24l11.2. (681 aa)
	W5ND91_LEPOC	Uncharacterized protein. (96 aa)
	pold2	Polymerase (DNA directed), delta 2, regulatory subunit. (469 aa)
	cul4b	Cullin 4B; Belongs to the cullin family. (864 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102682860	W5NNN7_LEPOC	ENSLOCP00000012007	ENSLOCP00000022246	Uncharacterized protein.	Uncharacterized protein.	0.408
LOC102682860	rps27a	ENSLOCP00000012007	ENSLOCP00000019146	Uncharacterized protein.	Ribosomal protein S27a.	0.546
LOC102682860	uba52	ENSLOCP00000012007	ENSLOCP00000002515	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.474
LOC102683306	W5NNN7_LEPOC	ENSLOCP00000003431	ENSLOCP00000022246	Uncharacterized protein.	Uncharacterized protein.	0.408
LOC102683306	rps27a	ENSLOCP00000003431	ENSLOCP00000019146	Uncharacterized protein.	Ribosomal protein S27a.	0.546
LOC102683306	uba52	ENSLOCP00000003431	ENSLOCP00000002515	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.474
LOC102684477	W5NNN7_LEPOC	ENSLOCP00000012113	ENSLOCP00000022246	Uncharacterized protein.	Uncharacterized protein.	0.408
LOC102684477	rps27a	ENSLOCP00000012113	ENSLOCP00000019146	Uncharacterized protein.	Ribosomal protein S27a.	0.546
LOC102684477	uba52	ENSLOCP00000012113	ENSLOCP00000002515	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.474
LOC102685691	W5NNN7_LEPOC	ENSLOCP00000002855	ENSLOCP00000022246	FinTRIM family, member 82.	Uncharacterized protein.	0.408
LOC102685691	rps27a	ENSLOCP00000002855	ENSLOCP00000019146	FinTRIM family, member 82.	Ribosomal protein S27a.	0.546
LOC102685691	uba52	ENSLOCP00000002855	ENSLOCP00000002515	FinTRIM family, member 82.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.474
LOC102685849	rps27a	ENSLOCP00000010853	ENSLOCP00000019146	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2.	Ribosomal protein S27a.	0.415
LOC102685849	uba52	ENSLOCP00000010853	ENSLOCP00000002515	Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.403
LOC102686523	W5NNN7_LEPOC	ENSLOCP00000017432	ENSLOCP00000022246	Uncharacterized protein.	Uncharacterized protein.	0.408
LOC102686523	rps27a	ENSLOCP00000017432	ENSLOCP00000019146	Uncharacterized protein.	Ribosomal protein S27a.	0.546
LOC102686523	uba52	ENSLOCP00000017432	ENSLOCP00000002515	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.474
LOC102686545	W5N8N6_LEPOC	ENSLOCP00000012188	ENSLOCP00000016995	Zgc:136908; Belongs to the AAA ATPase family.	ATPase family AAA domain containing 5a.	0.578
LOC102686545	W5NFE6_LEPOC	ENSLOCP00000012188	ENSLOCP00000019355	Zgc:136908; Belongs to the AAA ATPase family.	Polymerase (DNA directed), eta.	0.611
LOC102686545	W5NFJ7_LEPOC	ENSLOCP00000012188	ENSLOCP00000019406	Zgc:136908; Belongs to the AAA ATPase family.	SprT-like N-terminal domain.	0.896