40 items (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mcam	Melanoma cell adhesion molecule a. (621 aa)
	farp1	FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived). (1040 aa)
	W5M7X7_LEPOC	Extended synaptotagmin-like protein 1a. (1072 aa)
	myo9b	Myosin IXb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2130 aa)
	LOC102683472	Si:ch211-218g4.2. (1095 aa)
	actb	Actin, beta 1. (377 aa)
	BASP1	Brain abundant membrane attached signal protein 1. (244 aa)
	W5NMH6_LEPOC	Uncharacterized protein. (246 aa)
	W5NHK0_LEPOC	A kinase (PRKA) anchor protein 12b. (1509 aa)
	snap25	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (206 aa)
	cav1	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (180 aa)
	LOC102697663	Zgc:100918. (206 aa)
	W5NE24_LEPOC	Diaphanous-related formin 2. (1000 aa)
	rab7a	RAB7A, member RAS oncogene family. (208 aa)
	W5NAY6_LEPOC	Family with sequence similarity 169 member B. (167 aa)
	W5NAY4_LEPOC	Uncharacterized protein. (166 aa)
	snap23	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (223 aa)
	ACTG1	Uncharacterized protein. (434 aa)
	W5N2Z9_LEPOC	SLIT-ROBO Rho GTPase activating protein 2. (1067 aa)
	W5N0C2_LEPOC	BAI1-associated protein 2-like 2a. (422 aa)
	DIAPH1	Diaphanous related formin 1. (1243 aa)
	cav3	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (160 aa)
	SOWAHC	Sosondowah ankyrin repeat domain family Cb. (497 aa)
	arhgap5	Rho GTPase activating protein 5. (1508 aa)
	SYDE1	Synapse defective Rho GTPase homolog 1. (885 aa)
	baiap2l1	BAI1-associated protein 2-like 1b. (481 aa)
	arhgap39	Rho GTPase activating protein 39. (1105 aa)
	DEPDC1B	DEP domain containing 1B. (534 aa)
	lmnb1	Lamin B1; Belongs to the intermediate filament family. (590 aa)
	diaph3	Diaphanous-related formin 3. (956 aa)
	rhof	Ras homolog family member F. (215 aa)
	FAM169A	Family with sequence similarity 169 member Aa. (680 aa)
	W5MEU0_LEPOC	Rho GTPase activating protein 1. (423 aa)
	vangl1	Vang-like protein. (522 aa)
	W5MJ24_LEPOC	ANK_REP_REGION domain-containing protein. (405 aa)
	W5MLC2_LEPOC	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (274 aa)
	W5LV55_LEPOC	Zgc:158689. (603 aa)
	LOC102689614	Uncharacterized protein. (594 aa)
	W5M3Z5_LEPOC	Vesicle-associated membrane protein 3 (cellubrevin). (97 aa)
	W5M6F8_LEPOC	Rho GTPase activating protein 21b. (1967 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTG1	FAM169A	ENSLOCP00000015741	ENSLOCP00000006505	Uncharacterized protein.	Family with sequence similarity 169 member Aa.	0.461
ACTG1	LOC102683472	ENSLOCP00000015741	ENSLOCP00000004950	Uncharacterized protein.	Si:ch211-218g4.2.	0.452
ACTG1	SOWAHC	ENSLOCP00000015741	ENSLOCP00000012584	Uncharacterized protein.	Sosondowah ankyrin repeat domain family Cb.	0.400
ACTG1	W5LV55_LEPOC	ENSLOCP00000015741	ENSLOCP00000000012	Uncharacterized protein.	Zgc:158689.	0.809
ACTG1	W5MEU0_LEPOC	ENSLOCP00000015741	ENSLOCP00000006899	Uncharacterized protein.	Rho GTPase activating protein 1.	0.626
ACTG1	W5MLC2_LEPOC	ENSLOCP00000015741	ENSLOCP00000009181	Uncharacterized protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.822
ACTG1	W5N2Z9_LEPOC	ENSLOCP00000015741	ENSLOCP00000015008	Uncharacterized protein.	SLIT-ROBO Rho GTPase activating protein 2.	0.474
ACTG1	W5NAY4_LEPOC	ENSLOCP00000015741	ENSLOCP00000017793	Uncharacterized protein.	Uncharacterized protein.	0.461
ACTG1	W5NAY6_LEPOC	ENSLOCP00000015741	ENSLOCP00000017795	Uncharacterized protein.	Family with sequence similarity 169 member B.	0.461
ACTG1	arhgap39	ENSLOCP00000015741	ENSLOCP00000010295	Uncharacterized protein.	Rho GTPase activating protein 39.	0.452
ACTG1	baiap2l1	ENSLOCP00000015741	ENSLOCP00000010552	Uncharacterized protein.	BAI1-associated protein 2-like 1b.	0.495
ACTG1	cav1	ENSLOCP00000015741	ENSLOCP00000019204	Uncharacterized protein.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.438
ACTG1	cav3	ENSLOCP00000015741	ENSLOCP00000013046	Uncharacterized protein.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.438
ACTG1	lmnb1	ENSLOCP00000015741	ENSLOCP00000010354	Uncharacterized protein.	Lamin B1; Belongs to the intermediate filament family.	0.453
ACTG1	myo9b	ENSLOCP00000015741	ENSLOCP00000004932	Uncharacterized protein.	Myosin IXb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.587
ACTG1	rhof	ENSLOCP00000015741	ENSLOCP00000006224	Uncharacterized protein.	Ras homolog family member F.	0.525
ACTG1	vangl1	ENSLOCP00000015741	ENSLOCP00000007934	Uncharacterized protein.	Vang-like protein.	0.417
BASP1	FAM169A	ENSLOCP00000022261	ENSLOCP00000006505	Brain abundant membrane attached signal protein 1.	Family with sequence similarity 169 member Aa.	0.473
BASP1	SOWAHC	ENSLOCP00000022261	ENSLOCP00000012584	Brain abundant membrane attached signal protein 1.	Sosondowah ankyrin repeat domain family Cb.	0.458
BASP1	W5MLC2_LEPOC	ENSLOCP00000022261	ENSLOCP00000009181	Brain abundant membrane attached signal protein 1.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.579