8 items (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nfyc	Nuclear transcription factor Y, gamma. (342 aa)
	pole4	Polymerase (DNA-directed), epsilon 4, accessory subunit; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (135 aa)
	dr1	Down-regulator of transcription 1. (179 aa)
	nfyb	Nuclear transcription factor Y, beta a. (219 aa)
	drap1	CBFD_NFYB_HMF domain-containing protein. (114 aa)
	taf11	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (206 aa)
	chrac1	Chromatin accessibility complex subunit 1. (116 aa)
	pole3	Polymerase (DNA directed), epsilon 3 (p17 subunit). (148 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chrac1	dr1	ENSLOCP00000009465	ENSLOCP00000005465	Chromatin accessibility complex subunit 1.	Down-regulator of transcription 1.	0.493
chrac1	nfyb	ENSLOCP00000009465	ENSLOCP00000018507	Chromatin accessibility complex subunit 1.	Nuclear transcription factor Y, beta a.	0.990
chrac1	pole3	ENSLOCP00000009465	ENSLOCP00000002958	Chromatin accessibility complex subunit 1.	Polymerase (DNA directed), epsilon 3 (p17 subunit).	0.997
dr1	chrac1	ENSLOCP00000005465	ENSLOCP00000009465	Down-regulator of transcription 1.	Chromatin accessibility complex subunit 1.	0.493
dr1	drap1	ENSLOCP00000005465	ENSLOCP00000016178	Down-regulator of transcription 1.	CBFD_NFYB_HMF domain-containing protein.	0.996
dr1	nfyc	ENSLOCP00000005465	ENSLOCP00000001568	Down-regulator of transcription 1.	Nuclear transcription factor Y, gamma.	0.493
dr1	pole3	ENSLOCP00000005465	ENSLOCP00000002958	Down-regulator of transcription 1.	Polymerase (DNA directed), epsilon 3 (p17 subunit).	0.956
drap1	dr1	ENSLOCP00000016178	ENSLOCP00000005465	CBFD_NFYB_HMF domain-containing protein.	Down-regulator of transcription 1.	0.996
drap1	nfyb	ENSLOCP00000016178	ENSLOCP00000018507	CBFD_NFYB_HMF domain-containing protein.	Nuclear transcription factor Y, beta a.	0.722
drap1	pole3	ENSLOCP00000016178	ENSLOCP00000002958	CBFD_NFYB_HMF domain-containing protein.	Polymerase (DNA directed), epsilon 3 (p17 subunit).	0.569
nfyb	chrac1	ENSLOCP00000018507	ENSLOCP00000009465	Nuclear transcription factor Y, beta a.	Chromatin accessibility complex subunit 1.	0.990
nfyb	drap1	ENSLOCP00000018507	ENSLOCP00000016178	Nuclear transcription factor Y, beta a.	CBFD_NFYB_HMF domain-containing protein.	0.722
nfyb	nfyc	ENSLOCP00000018507	ENSLOCP00000001568	Nuclear transcription factor Y, beta a.	Nuclear transcription factor Y, gamma.	0.999
nfyb	pole4	ENSLOCP00000018507	ENSLOCP00000003954	Nuclear transcription factor Y, beta a.	Polymerase (DNA-directed), epsilon 4, accessory subunit; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.738
nfyc	dr1	ENSLOCP00000001568	ENSLOCP00000005465	Nuclear transcription factor Y, gamma.	Down-regulator of transcription 1.	0.493
nfyc	nfyb	ENSLOCP00000001568	ENSLOCP00000018507	Nuclear transcription factor Y, gamma.	Nuclear transcription factor Y, beta a.	0.999
nfyc	pole3	ENSLOCP00000001568	ENSLOCP00000002958	Nuclear transcription factor Y, gamma.	Polymerase (DNA directed), epsilon 3 (p17 subunit).	0.991
pole3	chrac1	ENSLOCP00000002958	ENSLOCP00000009465	Polymerase (DNA directed), epsilon 3 (p17 subunit).	Chromatin accessibility complex subunit 1.	0.997
pole3	dr1	ENSLOCP00000002958	ENSLOCP00000005465	Polymerase (DNA directed), epsilon 3 (p17 subunit).	Down-regulator of transcription 1.	0.956
pole3	drap1	ENSLOCP00000002958	ENSLOCP00000016178	Polymerase (DNA directed), epsilon 3 (p17 subunit).	CBFD_NFYB_HMF domain-containing protein.	0.569