STRINGSTRING
rbm42 rbm42 rbm12 rbm12 rbm12b rbm12b snrnp35 snrnp35 rbm15 rbm15 ppil4 ppil4 syncrip syncrip SCAF8 SCAF8 sf3b6 sf3b6 W5NH47_LEPOC W5NH47_LEPOC cnot4 cnot4 snrpb2 snrpb2 rbm34 rbm34 HNRNPLL HNRNPLL srsf7 srsf7 celf2 celf2 rbm17 rbm17 W5NES1_LEPOC W5NES1_LEPOC W5NE49_LEPOC W5NE49_LEPOC tia1 tia1 cstf2 cstf2 W5NDC8_LEPOC W5NDC8_LEPOC celf6 celf6 W5ND95_LEPOC W5ND95_LEPOC rbpms2 rbpms2 cpeb1 cpeb1 W5NCQ8_LEPOC W5NCQ8_LEPOC nono nono snrpa snrpa LOC102687476 LOC102687476 W5NAG4_LEPOC W5NAG4_LEPOC W5NAG1_LEPOC W5NAG1_LEPOC W5NA28_LEPOC W5NA28_LEPOC LOC102694417 LOC102694417 W5N908_LEPOC W5N908_LEPOC nol8 nol8 sltm sltm LOC102695202 LOC102695202 igf2bp1 igf2bp1 g3bp2 g3bp2 rbm15b rbm15b tnrc6c tnrc6c myef2 myef2 RBPMS RBPMS W5N6H4_LEPOC W5N6H4_LEPOC tut1 tut1 rbm47 rbm47 ralyl ralyl W5N4T4_LEPOC W5N4T4_LEPOC ELAVL2 ELAVL2 srsf3 srsf3 hnrnph1 hnrnph1 RBM33 RBM33 srsf5 srsf5 ppargc1a ppargc1a RBM20 RBM20 larp4b larp4b rbfox3 rbfox3 W5N2Q4_LEPOC W5N2Q4_LEPOC g3bp1 g3bp1 tra2a tra2a igf2bp3 igf2bp3 W5N0U2_LEPOC W5N0U2_LEPOC GRSF1 GRSF1 LOC102693219 LOC102693219 W5N067_LEPOC W5N067_LEPOC srsf2 srsf2 dnd1 dnd1 rbm22 rbm22 W5MYA5_LEPOC W5MYA5_LEPOC u2af2 u2af2 pspc1 pspc1 W5MXU3_LEPOC W5MXU3_LEPOC LOC102682218 LOC102682218 LOC102699125 LOC102699125 W5MX15_LEPOC W5MX15_LEPOC rbm27 rbm27 puf60 puf60 esrp1 esrp1 cpeb2 cpeb2 hnrnpab hnrnpab PABPC3 PABPC3 rbm11 rbm11 W5MTP3_LEPOC W5MTP3_LEPOC igf2bp2 igf2bp2 tra2b tra2b elavl4 elavl4 HNRNPH3 HNRNPH3 scaf4 scaf4 CPEB4 CPEB4 rbm8a rbm8a sf3b4 sf3b4 W5MRB4_LEPOC W5MRB4_LEPOC mcm3ap mcm3ap rbms1 rbms1 W5MQ16_LEPOC W5MQ16_LEPOC parp10 parp10 W5MP23_LEPOC W5MP23_LEPOC rbm46 rbm46 ptbp2 ptbp2 ewsr1 ewsr1 esrp2 esrp2 LOC102692451 LOC102692451 W5MMU1_LEPOC W5MMU1_LEPOC ssb ssb W5MMI2_LEPOC W5MMI2_LEPOC u2surp u2surp elavl3 elavl3 W5ML68_LEPOC W5ML68_LEPOC raver1 raver1 W5MKV1_LEPOC W5MKV1_LEPOC eif3g eif3g MARF1 MARF1 raly raly uhmk1 uhmk1 cpeb3 cpeb3 W5MJA0_LEPOC W5MJA0_LEPOC rbm45 rbm45 alkbh8 alkbh8 W5MIM9_LEPOC W5MIM9_LEPOC W5MIH3_LEPOC W5MIH3_LEPOC rbfox1 rbfox1 tardbp tardbp W5MHR8_LEPOC W5MHR8_LEPOC LOC102683561 LOC102683561 hnrnpa1 hnrnpa1 dazl dazl a1cf a1cf rbm24 rbm24 LOC102694475 LOC102694475 srsf1 srsf1 celf1 celf1 SRSF10 SRSF10 enox1 enox1 tnrc6a tnrc6a W5ME38_LEPOC W5ME38_LEPOC LOC102685476 LOC102685476 setd1b setd1b W5MCE8_LEPOC W5MCE8_LEPOC ncl ncl W5MBJ5_LEPOC W5MBJ5_LEPOC sart3 sart3 pabpn1l pabpn1l msi2 msi2 rbm26 rbm26 hnrnpm hnrnpm hnrnpr hnrnpr W5MA40_LEPOC W5MA40_LEPOC eif3b eif3b W5M9G1_LEPOC W5M9G1_LEPOC srsf9 srsf9 trnau1ap trnau1ap BOLL BOLL LOC102693382 LOC102693382 W5M6V2_LEPOC W5M6V2_LEPOC rbm38 rbm38 parp14 parp14 W5M579_LEPOC W5M579_LEPOC W5M513_LEPOC W5M513_LEPOC W5M4F1_LEPOC W5M4F1_LEPOC LOC102697525 LOC102697525 hnrnpc hnrnpc trmt2a trmt2a rbm7 rbm7 rbms3 rbms3 dazap1 dazap1 nifk nifk pabpc4 pabpc4 W5M1B6_LEPOC W5M1B6_LEPOC rnps1 rnps1 ptbp1 ptbp1 W5M0F1_LEPOC W5M0F1_LEPOC ncbp2 ncbp2 srsf6 srsf6 zcrb1 zcrb1 u2af1 u2af1 W5LYL9_LEPOC W5LYL9_LEPOC W5LYJ4_LEPOC W5LYJ4_LEPOC eif4h eif4h pabpn1 pabpn1 elavl1 elavl1 LOC102684042 LOC102684042 LOC102683838 LOC102683838 W5LVA3_LEPOC W5LVA3_LEPOC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rbm42RNA binding motif protein 42. (415 aa)
rbm12RNA binding motif protein 12. (893 aa)
rbm12bRNA binding motif protein 12B. (662 aa)
snrnp35Small nuclear ribonucleoprotein 35 (U11/U12). (273 aa)
rbm15RNA binding motif protein 15. (870 aa)
ppil4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (485 aa)
syncripSynaptotagmin binding, cytoplasmic RNA interacting protein, like. (464 aa)
SCAF8SR-related CTD associated factor 8. (1181 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
W5NH47_LEPOCCleavage and polyadenylation specific factor 6. (583 aa)
cnot4CCR4-NOT transcription complex, subunit 4a. (782 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (229 aa)
rbm34RNA binding motif protein 34. (441 aa)
HNRNPLLHeterogeneous nuclear ribonucleoprotein L like. (548 aa)
srsf7Serine and arginine rich splicing factor 7b. (242 aa)
celf2Cugbp, Elav-like family member 2. (523 aa)
rbm17RNA binding motif protein 17. (424 aa)
W5NES1_LEPOCRNA binding motif protein 28. (842 aa)
W5NE49_LEPOCEcto-NOX disulfide-thiol exchanger 2. (674 aa)
tia1Cytotoxic granule-associated RNA binding protein 1, like. (380 aa)
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (663 aa)
W5NDC8_LEPOCRNA binding motif protein X-linked. (401 aa)
celf6Si:dkey-205h23.2. (380 aa)
W5ND95_LEPOCHIV-1 Tat specific factor 1. (467 aa)
rbpms2RNA binding protein, mRNA processing factor 2b. (198 aa)
cpeb1Cytoplasmic polyadenylation element binding protein 1b. (565 aa)
W5NCQ8_LEPOCRNA binding motif protein 41. (338 aa)
nonoNon-POU domain containing, octamer-binding. (455 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (283 aa)
LOC102687476Serine and arginine rich splicing factor 7a. (183 aa)
W5NAG4_LEPOCHeterogeneous nuclear ribonucleoprotein L. (546 aa)
W5NAG1_LEPOCRNA binding motif protein 10. (754 aa)
W5NA28_LEPOCRNA binding motif protein 25b. (803 aa)
LOC102694417Serine and arginine rich splicing factor 5a. (301 aa)
W5N908_LEPOCAly/REF export factor. (241 aa)
nol8Nucleolar protein 8. (1254 aa)
sltmSAFB-like, transcription modulator. (1018 aa)
LOC102695202Zgc:163098. (949 aa)
igf2bp1Insulin-like growth factor 2 mRNA binding protein 1. (601 aa)
g3bp2GTPase activating protein (SH3 domain) binding protein 2. (503 aa)
rbm15bRNA binding motif protein 15B. (820 aa)
tnrc6cTrinucleotide repeat containing adaptor 6C1. (1931 aa)
myef2Myelin expression factor 2. (604 aa)
RBPMSRNA binding protein, mRNA processing factor. (182 aa)
W5N6H4_LEPOCtRNA selenocysteine 1 associated protein 1b. (311 aa)
tut1Terminal uridylyl transferase 1, U6 snRNA-specific. (811 aa)
rbm47RNA binding motif protein 47. (615 aa)
ralylRALY RNA binding protein like. (289 aa)
W5N4T4_LEPOCPPARG related coactivator 1. (1301 aa)
ELAVL2ELAV-like protein; Belongs to the RRM elav family. (407 aa)
srsf3Serine and arginine rich splicing factor 3a. (168 aa)
hnrnph1Heterogeneous nuclear ribonucleoprotein H1. (468 aa)
RBM33RNA binding motif protein 33. (1186 aa)
srsf5Serine and arginine rich splicing factor 5b. (267 aa)
ppargc1aPeroxisome proliferator-activated receptor gamma, coactivator 1 alpha. (833 aa)
RBM20RNA binding motif protein 20. (1175 aa)
larp4bLa ribonucleoprotein domain family, member 4B. (774 aa)
rbfox3RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events. (386 aa)
W5N2Q4_LEPOCUncharacterized protein. (185 aa)
g3bp1GTPase activating protein (SH3 domain) binding protein 1. (480 aa)
tra2aTransformer 2 alpha homolog. (291 aa)
igf2bp3Insulin-like growth factor 2 mRNA binding protein 3. (617 aa)
W5N0U2_LEPOCMatrin-type domain-containing protein. (900 aa)
GRSF1G-rich RNA sequence binding factor 1. (436 aa)
LOC102693219Matrin 3-like 1.1. (1139 aa)
W5N067_LEPOCTIA1 cytotoxic granule-associated RNA binding protein-like 1. (452 aa)
srsf2Serine and arginine rich splicing factor 2a. (215 aa)
dnd1DND microRNA-mediated repression inhibitor 1. (288 aa)
rbm22RNA binding motif protein 22. (426 aa)
W5MYA5_LEPOCRNA binding motif protein 6. (1235 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (486 aa)
pspc1Paraspeckle component 1. (509 aa)
W5MXU3_LEPOCRNA binding motif protein 5. (865 aa)
LOC102682218Heterogeneous nuclear ribonucleoprotein D. (311 aa)
LOC102699125Heterogeneous nuclear ribonucleoprotein D-like. (296 aa)
W5MX15_LEPOCSplicing regulatory glutamine/lysine-rich protein 1. (605 aa)
rbm27RNA binding motif protein 27. (1018 aa)
puf60Poly-U binding splicing factor b. (527 aa)
esrp1RRM domain-containing protein. (717 aa)
cpeb2Cytoplasmic polyadenylation element binding protein 2. (904 aa)
hnrnpabHeterogeneous nuclear ribonucleoprotein A/Bb. (359 aa)
PABPC3Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (640 aa)
rbm11RRM domain-containing protein. (254 aa)
W5MTP3_LEPOCSerine and arginine rich splicing factor 11. (473 aa)
igf2bp2Insulin-like growth factor 2 mRNA binding protein 2b. (608 aa)
tra2bRRM domain-containing protein. (297 aa)
elavl4ELAV-like protein; Belongs to the RRM elav family. (408 aa)
HNRNPH3Heterogeneous nuclear ribonucleoprotein H3. (431 aa)
scaf4SR-related CTD-associated factor 4a. (1102 aa)
CPEB4Cytoplasmic polyadenylation element binding protein 4a. (731 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
sf3b4Splicing factor 3b, subunit 4. (422 aa)
W5MRB4_LEPOCZgc:123010. (507 aa)
mcm3apMinichromosome maintenance complex component 3 associated protein. (2172 aa)
rbms1RNA binding motif, single stranded interacting protein 1a. (395 aa)
W5MQ16_LEPOCZgc:110796. (155 aa)
parp10Poly [ADP-ribose] polymerase. (1024 aa)
W5MP23_LEPOCRNA binding motif protein 19. (922 aa)
rbm46RNA binding motif protein 46. (523 aa)
ptbp2Polypyrimidine tract binding protein 2a. (549 aa)
ewsr1EWS RNA-binding protein 1b. (667 aa)
esrp2Epithelial splicing regulatory protein 2. (733 aa)
LOC102692451U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (349 aa)
W5MMU1_LEPOCRNA-binding region (RNP1, RRM) containing 3. (504 aa)
ssbSmall RNA binding exonuclease protection factor La. (428 aa)
W5MMI2_LEPOCSpen family transcriptional repressor. (3595 aa)
u2surpU2 snRNP-associated SURP domain containing. (1030 aa)
elavl3ELAV-like protein; Belongs to the RRM elav family. (365 aa)
W5ML68_LEPOCPolyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
raver1Ribonucleoprotein, PTB-binding 1. (810 aa)
W5MKV1_LEPOCZinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (525 aa)
eif3gEukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (300 aa)
MARF1Meiosis regulator and mRNA stability factor 1. (1753 aa)
ralyRALY heterogeneous nuclear ribonucleoprotein. (277 aa)
uhmk1U2AF homology motif (UHM) kinase 1. (431 aa)
cpeb3Cytoplasmic polyadenylation element binding protein 3. (696 aa)
W5MJA0_LEPOCHeterogeneous nuclear ribonucleoprotein A3. (349 aa)
rbm45RNA binding motif protein 45. (475 aa)
alkbh8AlkB homolog 8, tRNA methyltransferase. (685 aa)
W5MIM9_LEPOCNuclear receptor coactivator 5. (693 aa)
W5MIH3_LEPOCRibonucleoprotein, PTB-binding 2. (858 aa)
rbfox1RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events. (398 aa)
tardbpTAR DNA binding protein, like. (409 aa)
W5MHR8_LEPOCRNA binding motif protein 39a. (526 aa)
LOC102683561Cugbp, Elav-like family member 3b. (383 aa)
hnrnpa1Uncharacterized protein. (367 aa)
dazlDeleted in azoospermia-like. (240 aa)
a1cfApobec1 complementation factor. (593 aa)
rbm24RNA binding motif protein 24b. (247 aa)
LOC102694475RNA binding motif, single stranded interacting protein 2a. (415 aa)
srsf1Serine and arginine rich splicing factor 1b. (247 aa)
celf1Cugbp, Elav-like family member 1. (534 aa)
SRSF10Serine and arginine rich splicing factor 10. (245 aa)
enox1Ecto-NOX disulfide-thiol exchanger 1. (626 aa)
tnrc6aTrinucleotide repeat containing adaptor 6A. (2137 aa)
W5ME38_LEPOCEukaryotic translation initiation factor 4Ba. (615 aa)
LOC102685476Cugbp, Elav-like family member 5a. (547 aa)
setd1bSET domain containing 1B, histone lysine methyltransferase a. (1985 aa)
W5MCE8_LEPOCRRM domain-containing protein. (147 aa)
nclNucleolin. (747 aa)
W5MBJ5_LEPOCCUGBP, Elav-like family member 4. (411 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (992 aa)
pabpn1lPoly(A) binding protein, nuclear 1-like (cytoplasmic). (232 aa)
msi2Musashi RNA-binding protein 2b. (387 aa)
rbm26RNA binding motif protein 26. (1004 aa)
hnrnpmHeterogeneous nuclear ribonucleoprotein M. (654 aa)
hnrnprHeterogeneous nuclear ribonucleoprotein R. (635 aa)
W5MA40_LEPOCRRM domain-containing protein. (975 aa)
eif3bEukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (682 aa)
W5M9G1_LEPOCUncharacterized protein. (472 aa)
srsf9Serine and arginine rich splicing factor 9. (248 aa)
trnau1aptRNA selenocysteine 1 associated protein 1a. (295 aa)
BOLLBoule homolog, RNA binding protein. (279 aa)
LOC102693382Scaffold attachment factor B. (889 aa)
W5M6V2_LEPOCPoly [ADP-ribose] polymerase. (1824 aa)
rbm38RNA binding motif protein 38. (229 aa)
parp14Poly [ADP-ribose] polymerase. (1816 aa)
W5M579_LEPOCRNA binding motif protein 18. (193 aa)
W5M513_LEPOCPolypyrimidine tract binding protein 3. (602 aa)
W5M4F1_LEPOCRNA binding motif protein 4.1. (149 aa)
LOC102697525RNA binding motif protein 4.3. (378 aa)
hnrnpcHeterogeneous nuclear ribonucleoprotein C. (288 aa)
trmt2atRNA methyltransferase 2 homolog A; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (625 aa)
rbm7RNA binding motif protein 7. (279 aa)
rbms3RNA binding motif, single stranded interacting protein. (292 aa)
dazap1DAZ associated protein 1. (440 aa)
nifkNucleolar protein interacting with the FHA domain of MKI67. (257 aa)
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
W5M1B6_LEPOCUncharacterized protein. (648 aa)
rnps1RNA binding protein S1, serine-rich domain. (282 aa)
ptbp1Polypyrimidine tract binding protein 1b. (568 aa)
W5M0F1_LEPOCTAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (407 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
srsf6Uncharacterized protein. (369 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (220 aa)
u2af1U2 small nuclear RNA auxiliary factor 1. (192 aa)
W5LYL9_LEPOCSplicing factor proline/glutamine-rich. (700 aa)
W5LYJ4_LEPOCMethenyltetrahydrofolate synthetase domain containing. (434 aa)
eif4hEukaryotic translation initiation factor 4h. (261 aa)
pabpn1Poly(A) binding protein, nuclear 1. (285 aa)
elavl1ELAV-like protein; Belongs to the RRM elav family. (340 aa)
LOC102684042RRM domain-containing protein. (121 aa)
LOC102683838RRM domain-containing protein. (213 aa)
W5LVA3_LEPOCFUS RNA binding protein. (530 aa)
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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