107 items (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W5LVG1_LEPOC	Ig-like domain-containing protein. (230 aa)
	W5LVI7_LEPOC	Vascular cell adhesion molecule 1b. (814 aa)
	W5LW15_LEPOC	Ig-like domain-containing protein. (229 aa)
	W5LW67_LEPOC	Ig-like domain-containing protein. (203 aa)
	kiaa0319l	Si:ch211-193k19.1. (554 aa)
	W5LWT9_LEPOC	Uncharacterized protein. (607 aa)
	W5LWV7_LEPOC	Ig-like domain-containing protein. (281 aa)
	W5LWV8_LEPOC	Ig-like domain-containing protein. (187 aa)
	LOC107076030	Uncharacterized protein. (425 aa)
	W5LX70_LEPOC	Uncharacterized protein. (324 aa)
	W5LXQ5_LEPOC	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system. (385 aa)
	LOC107076047	Uncharacterized protein. (240 aa)
	W5LXT3_LEPOC	Uncharacterized protein. (581 aa)
	kirrel1	Kirre like nephrin family adhesion molecule 1b. (827 aa)
	cntn1	Contactin 1b. (1022 aa)
	W5LZK4_LEPOC	Uncharacterized protein. (314 aa)
	W5LZS3_LEPOC	Uncharacterized protein. (482 aa)
	W5LZU1_LEPOC	Uncharacterized protein. (621 aa)
	W5M048_LEPOC	Down syndrome cell adhesion molecule b. (2006 aa)
	W5M073_LEPOC	Uncharacterized protein. (277 aa)
	W5M081_LEPOC	Cell adhesion molecule 3. (442 aa)
	W5M0S1_LEPOC	Hemicentin 1. (5590 aa)
	W5M153_LEPOC	Heparan sulfate proteoglycan 2. (2524 aa)
	W5M171_LEPOC	Ig-like domain-containing protein. (206 aa)
	IGSF22	Immunoglobulin superfamily member 22. (1293 aa)
	W5M1P7_LEPOC	Immunoglobulin superfamily, member 10. (2537 aa)
	W5M250_LEPOC	Uncharacterized protein. (616 aa)
	W5M259_LEPOC	Uncharacterized protein. (4839 aa)
	W5M4L1_LEPOC	Zgc:165604. (230 aa)
	mcam	Melanoma cell adhesion molecule a. (621 aa)
	nphs1	NPHS1 adhesion molecule, nephrin. (1263 aa)
	W5M8K3_LEPOC	Kirre like nephrin family adhesion molecule 3, like. (738 aa)
	siglec15	Uncharacterized protein. (286 aa)
	W5MAM9_LEPOC	Uncharacterized protein. (420 aa)
	LOC107077536	Uncharacterized protein. (519 aa)
	LOC107080075	Ig-like domain-containing protein. (253 aa)
	W5MBA3_LEPOC	Cell adhesion molecule 1b. (409 aa)
	W5MCX2_LEPOC	Basigin. (216 aa)
	alcam	Activated leukocyte cell adhesion molecule a. (578 aa)
	W5MD64_LEPOC	Uncharacterized protein. (762 aa)
	W5MD81_LEPOC	Uncharacterized protein. (583 aa)
	W5MDN7_LEPOC	Ig-like domain-containing protein. (542 aa)
	W5MDT2_LEPOC	Uncharacterized protein. (319 aa)
	LOC102689089	Ig-like domain-containing protein. (536 aa)
	W5ME22_LEPOC	Uncharacterized protein. (318 aa)
	W5ME81_LEPOC	Si:dkey-238d18.5. (511 aa)
	W5MEH6_LEPOC	Ig-like domain-containing protein. (283 aa)
	MYOM3	Myomesin 3. (1462 aa)
	LOC102688749	Ig-like domain-containing protein. (326 aa)
	W5MFA5_LEPOC	Nectin cell adhesion molecule 1b. (481 aa)
	W5MFG5_LEPOC	Ig-like domain-containing protein. (222 aa)
	W5MH34_LEPOC	Titin, tandem duplicate 2. (32000 aa)
	W5MHI8_LEPOC	Uncharacterized protein. (304 aa)
	W5MI65_LEPOC	Down syndrome cell adhesion molecule like 1. (2084 aa)
	W5MJ54_LEPOC	Uncharacterized protein. (373 aa)
	W5MJ69_LEPOC	Uncharacterized protein. (315 aa)
	LOC102684576	Uncharacterized protein. (479 aa)
	W5MK28_LEPOC	Uncharacterized protein. (305 aa)
	W5MKI1_LEPOC	Uncharacterized protein. (360 aa)
	W5MKK8_LEPOC	Uncharacterized protein. (682 aa)
	W5ML26_LEPOC	Uncharacterized protein. (329 aa)
	W5MPY1_LEPOC	Ig-like domain-containing protein. (244 aa)
	W5MQ10_LEPOC	Ig-like domain-containing protein. (215 aa)
	LOC102695309	Interleukin 18 receptor 1. (541 aa)
	W5MQI3_LEPOC	Uncharacterized protein. (592 aa)
	unc5b	Unc-5 netrin receptor B. (933 aa)
	W5MRE2_LEPOC	Cell adhesion molecule 2a. (364 aa)
	W5MRX7_LEPOC	Uncharacterized protein. (949 aa)
	W5MS16_LEPOC	Uncharacterized protein. (2308 aa)
	W5MSM2_LEPOC	Obscurin-like 1a. (2155 aa)
	IL1RAP	Interleukin 1 receptor accessory protein. (692 aa)
	W5MUH9_LEPOC	Uncharacterized protein. (544 aa)
	W5MUK1_LEPOC	Uncharacterized protein. (797 aa)
	mxra5	Matrix-remodelling associated 5b. (2578 aa)
	W5MXF8_LEPOC	Uncharacterized protein. (275 aa)
	hepacam2	HEPACAM family member 2. (467 aa)
	LOC102698036	Ig-like domain-containing protein. (352 aa)
	LOC107076814	Ig-like domain-containing protein. (343 aa)
	csf1r	Colony stimulating factor 1 receptor, a; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (969 aa)
	pdgfrb	Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1079 aa)
	W5MZ60_LEPOC	Uncharacterized protein. (565 aa)
	W5MZ68_LEPOC	Myomesin 1a (skelemin). (1679 aa)
	W5N018_LEPOC	Uncharacterized protein. (236 aa)
	mdga2	MAM domain containing glycosylphosphatidylinositol anchor 2a. (954 aa)
	LOC102695003	Uncharacterized protein. (405 aa)
	alpk2	Uncharacterized protein. (1806 aa)
	fgfr4	Fibroblast growth factor receptor. (921 aa)
	adamtsl3	ADAMTS-like 3. (1787 aa)
	LOC107078539	Uncharacterized protein. (287 aa)
	W5N7A5_LEPOC	Uncharacterized protein. (223 aa)
	W5N7B6_LEPOC	Uncharacterized protein. (219 aa)
	W5N7C6_LEPOC	Uncharacterized protein. (221 aa)
	W5N7D8_LEPOC	Uncharacterized protein. (226 aa)
	LOC102682923	Platelet/endothelial cell adhesion molecule 1. (713 aa)
	igdcc4	Immunoglobulin superfamily, DCC subclass, member 4. (1278 aa)
	pdgfrl	Platelet-derived growth factor receptor-like. (360 aa)
	kdr	Kinase insert domain receptor (a type III receptor tyrosine kinase); Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1359 aa)
	cd276	CD276 molecule. (327 aa)
	nptn	Neuroplastin a. (409 aa)
	W5NBM8_LEPOC	MALT paracaspase 3. (628 aa)
	W5NBN5_LEPOC	Uncharacterized protein. (1856 aa)
	W5NBT3_LEPOC	Uncharacterized protein. (258 aa)
	W5NCC6_LEPOC	L1 cell adhesion molecule, paralog a. (1227 aa)
	W5NDL9_LEPOC	Kinase insert domain receptor like; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1361 aa)
	ADGRF5	Adhesion G protein-coupled receptor F5; Belongs to the G-protein coupled receptor 2 family. (1294 aa)
	W5NJL7_LEPOC	Myomesin 2a. (1483 aa)
	W5NKB1_LEPOC	MAM domain containing glycosylphosphatidylinositol anchor 1. (906 aa)

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IL1RAP	LOC102695309	ENSLOCP00000011450	ENSLOCP00000010618	Interleukin 1 receptor accessory protein.	Interleukin 18 receptor 1.	0.483
IL1RAP	W5MQI3_LEPOC	ENSLOCP00000011450	ENSLOCP00000010642	Interleukin 1 receptor accessory protein.	Uncharacterized protein.	0.483
LOC102682923	LOC102695003	ENSLOCP00000016577	ENSLOCP00000014440	Platelet/endothelial cell adhesion molecule 1.	Uncharacterized protein.	0.595
LOC102682923	W5LVI7_LEPOC	ENSLOCP00000016577	ENSLOCP00000000144	Platelet/endothelial cell adhesion molecule 1.	Vascular cell adhesion molecule 1b.	0.457
LOC102682923	W5NDL9_LEPOC	ENSLOCP00000016577	ENSLOCP00000018728	Platelet/endothelial cell adhesion molecule 1.	Kinase insert domain receptor like; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.728
LOC102682923	kdr	ENSLOCP00000016577	ENSLOCP00000017473	Platelet/endothelial cell adhesion molecule 1.	Kinase insert domain receptor (a type III receptor tyrosine kinase); Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.728
LOC102682923	mcam	ENSLOCP00000016577	ENSLOCP00000004055	Platelet/endothelial cell adhesion molecule 1.	Melanoma cell adhesion molecule a.	0.426
LOC102682923	pdgfrb	ENSLOCP00000016577	ENSLOCP00000013637	Platelet/endothelial cell adhesion molecule 1.	Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.711
LOC102682923	pdgfrl	ENSLOCP00000016577	ENSLOCP00000017147	Platelet/endothelial cell adhesion molecule 1.	Platelet-derived growth factor receptor-like.	0.595
LOC102695003	LOC102682923	ENSLOCP00000014440	ENSLOCP00000016577	Uncharacterized protein.	Platelet/endothelial cell adhesion molecule 1.	0.595
LOC102695003	W5M153_LEPOC	ENSLOCP00000014440	ENSLOCP00000002110	Uncharacterized protein.	Heparan sulfate proteoglycan 2.	0.431
LOC102695003	csf1r	ENSLOCP00000014440	ENSLOCP00000013625	Uncharacterized protein.	Colony stimulating factor 1 receptor, a; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.501
LOC102695003	fgfr4	ENSLOCP00000014440	ENSLOCP00000015131	Uncharacterized protein.	Fibroblast growth factor receptor.	0.443
LOC102695003	pdgfrb	ENSLOCP00000014440	ENSLOCP00000013637	Uncharacterized protein.	Platelet-derived growth factor receptor, beta polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.697
LOC102695309	IL1RAP	ENSLOCP00000010618	ENSLOCP00000011450	Interleukin 18 receptor 1.	Interleukin 1 receptor accessory protein.	0.483
LOC107076814	W5LWT9_LEPOC	ENSLOCP00000013537	ENSLOCP00000000596	Ig-like domain-containing protein.	Uncharacterized protein.	0.464
LOC107076814	W5LX70_LEPOC	ENSLOCP00000013537	ENSLOCP00000000727	Ig-like domain-containing protein.	Uncharacterized protein.	0.407
LOC107076814	W5LXQ5_LEPOC	ENSLOCP00000013537	ENSLOCP00000000912	Ig-like domain-containing protein.	Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.	0.407
LOC107076814	W5LXT3_LEPOC	ENSLOCP00000013537	ENSLOCP00000000940	Ig-like domain-containing protein.	Uncharacterized protein.	0.464
LOC107076814	W5LZS3_LEPOC	ENSLOCP00000013537	ENSLOCP00000001630	Ig-like domain-containing protein.	Uncharacterized protein.	0.407