STRINGSTRING
W5M4X1_LEPOC W5M4X1_LEPOC pop5 pop5 LOC102688758 LOC102688758 nmd3 nmd3 W5M7L2_LEPOC W5M7L2_LEPOC csnk2a2 csnk2a2 sbds sbds ak6 ak6 W5MAF2_LEPOC W5MAF2_LEPOC BRD3 BRD3 W5MB94_LEPOC W5MB94_LEPOC W5MBS5_LEPOC W5MBS5_LEPOC W5MBV0_LEPOC W5MBV0_LEPOC W5MC05_LEPOC W5MC05_LEPOC LOC102684231 LOC102684231 W5MCA8_LEPOC W5MCA8_LEPOC vwc2 vwc2 tmem120b tmem120b arhgap42 arhgap42 pop4 pop4 gnl2 gnl2 adgrd1 adgrd1 RAN RAN riok2 riok2 brd4 brd4 LOC102684075 LOC102684075 W5MKQ4_LEPOC W5MKQ4_LEPOC kri1 kri1 eif6 eif6 xrn1 xrn1 DXO DXO W5MND4_LEPOC W5MND4_LEPOC W5MNU7_LEPOC W5MNU7_LEPOC mettl9 mettl9 emg1 emg1 wdr75 wdr75 tbl3 tbl3 mcc mcc nhp2 nhp2 dnttip2 dnttip2 POP1 POP1 rcl1 rcl1 nop58 nop58 tmem167b tmem167b imp3 imp3 wdr36 wdr36 ARHGAP26 ARHGAP26 gnl3 gnl3 W5MXN1_LEPOC W5MXN1_LEPOC retreg2 retreg2 utp15 utp15 W5MYW8_LEPOC W5MYW8_LEPOC UTP18 UTP18 rpp40 rpp40 GAR1 GAR1 riok1 riok1 rrp7a rrp7a gtpbp4 gtpbp4 retreg3 retreg3 retreg1 retreg1 znf622 znf622 drosha drosha efl1 efl1 bms1 bms1 clg3h15orf40 clg3h15orf40 trub1 trub1 spata5l1 spata5l1 W5N7T4_LEPOC W5N7T4_LEPOC LOC102690990 LOC102690990 mphosph10 mphosph10 W5N8G8_LEPOC W5N8G8_LEPOC utp6 utp6 LOC102693880 LOC102693880 tubgcp4 tubgcp4 W5NAR6_LEPOC W5NAR6_LEPOC nxt2 nxt2 W5NBQ8_LEPOC W5NBQ8_LEPOC W5NBU7_LEPOC W5NBU7_LEPOC rpp30 rpp30 ticrr ticrr W5NDC9_LEPOC W5NDC9_LEPOC utp14a utp14a W5NES1_LEPOC W5NES1_LEPOC W5NFG8_LEPOC W5NFG8_LEPOC xpo1 xpo1 W5NIS4_LEPOC W5NIS4_LEPOC W5NIS5_LEPOC W5NIS5_LEPOC W5NIT1_LEPOC W5NIT1_LEPOC W5NJ29_LEPOC W5NJ29_LEPOC xrn2 xrn2 W5NJY8_LEPOC W5NJY8_LEPOC W5NJZ0_LEPOC W5NJZ0_LEPOC W5NJZ1_LEPOC W5NJZ1_LEPOC W5NJZ2_LEPOC W5NJZ2_LEPOC tmem203 tmem203 pop7 pop7 LOC102683569 LOC102683569 LOC102697955 LOC102697955 W5NP89_LEPOC W5NP89_LEPOC W5LXB6_LEPOC W5LXB6_LEPOC rexo1 rexo1 W5LZ72_LEPOC W5LZ72_LEPOC nob1 nob1 tmem120a tmem120a W5M1V6_LEPOC W5M1V6_LEPOC cptp cptp csnk2a1 csnk2a1 utp4 utp4 rexo2 rexo2 SPATA5 SPATA5 nat10 nat10
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
W5M4X1_LEPOCUsher syndrome 1C binding protein 1. (668 aa)
pop5Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (168 aa)
LOC102688758Zgc:152968. (1051 aa)
nmd360S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (505 aa)
W5M7L2_LEPOCPWP2 small subunit processome component. (923 aa)
csnk2a2Casein kinase 2, alpha prime polypeptide b; Belongs to the protein kinase superfamily. (393 aa)
sbdsSBDS ribosome maturation factor. (250 aa)
ak6Adenylate kinase isoenzyme 6; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation; Belongs to the adenylate kinase family. AK6 subfamily. (179 aa)
W5MAF2_LEPOCVon Willebrand factor C domain containing 2 like. (229 aa)
BRD3Bromodomain containing 3. (743 aa)
W5MB94_LEPOCFibrillarin. (158 aa)
W5MBS5_LEPOCUncharacterized protein. (1095 aa)
W5MBV0_LEPOCNop domain-containing protein. (588 aa)
W5MC05_LEPOCLarge 60S subunit nuclear export GTPase 1. (647 aa)
LOC102684231Si:ch211-212d10.2. (134 aa)
W5MCA8_LEPOCNucleolar protein 6. (1105 aa)
vwc2Von Willebrand factor C domain containing 2. (317 aa)
tmem120bTransmembrane protein 120B. (340 aa)
arhgap42Rho GTPase activating protein 42a. (901 aa)
pop4Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. (220 aa)
gnl2Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (728 aa)
adgrd1Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family. (916 aa)
RANGTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (220 aa)
riok2RIO kinase 2 (yeast). (540 aa)
brd4Bromodomain containing 4. (1547 aa)
LOC102684075Casein kinase 2, alpha 1 polypeptide; Belongs to the protein kinase superfamily. (392 aa)
W5MKQ4_LEPOCUncharacterized protein. (281 aa)
kri1KRI1 homolog. (763 aa)
eif6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
xrn15'-3' exoribonuclease 1. (1773 aa)
DXODecapping exoribonuclease. (423 aa)
W5MND4_LEPOCRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
W5MNU7_LEPOCGTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (176 aa)
mettl9Methyltransferase like 9. (320 aa)
emg1EMG1 N1-specific pseudouridine methyltransferase. (244 aa)
wdr75WD repeat domain 75. (831 aa)
tbl3Transducin (beta)-like 3. (976 aa)
mccMCC regulator of WNT signaling pathway. (926 aa)
nhp2Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (154 aa)
dnttip2Deoxynucleotidyltransferase, terminal, interacting protein 2. (817 aa)
POP1POP1 homolog, ribonuclease P/MRP subunit. (1009 aa)
rcl1RNA terminal phosphate cyclase-like 1. (377 aa)
nop58NOP58 ribonucleoprotein homolog (yeast). (528 aa)
tmem167bProtein kish; Involved in the early part of the secretory pathway. (74 aa)
imp3IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
wdr36WD repeat domain 36. (900 aa)
ARHGAP26Rho GTPase activating protein 26. (791 aa)
gnl3Guanine nucleotide binding protein-like 3 (nucleolar). (560 aa)
W5MXN1_LEPOCFCF1 rRNA-processing protein. (150 aa)
retreg2Reticulophagy regulator family member 2. (544 aa)
utp15UTP15 small subunit processome component. (505 aa)
W5MYW8_LEPOCWD repeat domain 3. (940 aa)
UTP18UTP18 small subunit processome component. (532 aa)
rpp40Ribonuclease P/MRP 40 subunit. (363 aa)
GAR1H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (234 aa)
riok1Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (562 aa)
rrp7aRRM_Rrp7 domain-containing protein. (75 aa)
gtpbp4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (650 aa)
retreg3Reticulophagy regulator family member 3. (410 aa)
retreg1Reticulophagy regulator 1. (450 aa)
znf622Zinc finger protein 622. (493 aa)
droshaDrosha ribonuclease III. (1400 aa)
efl1Elongation factor like GTPase 1. (1143 aa)
bms1BMS1 ribosome biogenesis factor. (1229 aa)
clg3h15orf40Zgc:193812. (122 aa)
trub1TruB pseudouridine (psi) synthase family member 1. (293 aa)
spata5l1Spermatogenesis associated 5-like 1. (771 aa)
W5N7T4_LEPOCUncharacterized protein. (409 aa)
LOC102690990Si:ch73-269m23.5. (288 aa)
mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (691 aa)
W5N8G8_LEPOCDyskeratosis congenita 1, dyskerin. (538 aa)
utp6UTP6 small subunit processome component. (603 aa)
LOC102693880Si:ch73-314g15.3. (422 aa)
tubgcp4Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family. (668 aa)
W5NAR6_LEPOCIMP U3 small nucleolar ribonucleoprotein 4. (293 aa)
nxt2Nuclear transport factor 2-like export factor 2. (143 aa)
W5NBQ8_LEPOCOligophrenin 1. (831 aa)
W5NBU7_LEPOCGuanine nucleotide binding protein-like 3 (nucleolar)-like. (591 aa)
rpp30Ribonuclease P/MRP 30 subunit. (266 aa)
ticrrTreslin_N domain-containing protein. (2006 aa)
W5NDC9_LEPOCRibonuclease P and MRP subunit p25, b. (166 aa)
utp14aUTP14C small subunit processome component. (838 aa)
W5NES1_LEPOCRNA binding motif protein 28. (842 aa)
W5NFG8_LEPOCTubulin tyrosine ligase-like family, member 2. (569 aa)
xpo1Exportin 1 (CRM1 homolog, yeast) a. (1076 aa)
W5NIS4_LEPOCU3snoRNP10 domain-containing protein. (319 aa)
W5NIS5_LEPOCUncharacterized protein. (758 aa)
W5NIT1_LEPOCHEAT repeat containing 1. (770 aa)
W5NJ29_LEPOCNuclear VCP like. (776 aa)
xrn25'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (944 aa)
W5NJY8_LEPOCMidasin AAA ATPase 1. (2833 aa)
W5NJZ0_LEPOCAAA_lid_5 domain-containing protein. (209 aa)
W5NJZ1_LEPOCUncharacterized protein. (639 aa)
W5NJZ2_LEPOCUncharacterized protein. (188 aa)
tmem203Transmembrane protein 203. (138 aa)
pop7Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences. (149 aa)
LOC102683569Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
LOC102697955Ribonuclease P/MRP 25 subunit-like. (189 aa)
W5NP89_LEPOCRibonuclease P/MRP 38 subunit. (284 aa)
W5LXB6_LEPOCCasein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (157 aa)
rexo1REX1, RNA exonuclease 1 homolog. (1194 aa)
W5LZ72_LEPOCZgc:153681. (516 aa)
nob1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (449 aa)
tmem120aZgc:103681. (359 aa)
W5M1V6_LEPOCProtein kish; Involved in the early part of the secretory pathway. (72 aa)
cptpCeramide-1-phosphate transfer protein. (216 aa)
csnk2a1Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily. (392 aa)
utp4UTP4 small subunit processome component. (693 aa)
rexo2Small fragment nuclease. (210 aa)
SPATA5Spermatogenesis associated 5. (892 aa)
nat10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1002 aa)
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.