51 items (Daucus carota) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCAR_020268	Uncharacterized protein. (210 aa)
	DCAR_023477	Uncharacterized protein. (237 aa)
	DCAR_024287	Uncharacterized protein. (210 aa)
	DCAR_006902	LysM domain-containing protein. (104 aa)
	DCAR_012333	XH domain-containing protein. (242 aa)
	DCAR_025644	Uncharacterized protein. (255 aa)
	DCAR_024346	Uncharacterized protein. (211 aa)
	DCAR_017613	AAA domain-containing protein. (1015 aa)
	DCAR_018854	Uncharacterized protein. (195 aa)
	DCAR_015108	Uncharacterized protein. (70 aa)
	DCAR_012756	EGF-like domain-containing protein. (844 aa)
	DCAR_009245	Uncharacterized protein. (133 aa)
	DCAR_009405	Uncharacterized protein. (155 aa)
	DCAR_010387	zf-XS domain-containing protein. (112 aa)
	DCAR_010355	Uncharacterized protein. (163 aa)
	DCAR_002642	Uncharacterized protein. (250 aa)
	DCAR_023528	Uncharacterized protein. (270 aa)
	DCAR_026346	Uncharacterized protein. (114 aa)
	DCAR_021798	Uncharacterized protein. (70 aa)
	DCAR_017830	Uncharacterized protein. (93 aa)
	DCAR_019505	EGF-like domain-containing protein. (827 aa)
	DCAR_015880	TF-B3 domain-containing protein. (317 aa)
	DCAR_015612	Uncharacterized protein. (90 aa)
	DCAR_015557	BURP domain-containing protein. (110 aa)
	DCAR_015127	Uncharacterized protein. (62 aa)
	DCAR_014845	Uncharacterized protein. (278 aa)
	DCAR_008708	AAI domain-containing protein; Belongs to the plant LTP family. (201 aa)
	DCAR_009138	Uncharacterized protein. (171 aa)
	DCAR_009153	LysM domain-containing protein. (106 aa)
	DCAR_009708	Uncharacterized protein. (159 aa)
	DCAR_010382	zf-XS domain-containing protein. (112 aa)
	DCAR_011323	Uncharacterized protein. (82 aa)
	DCAR_006153	Uncharacterized protein. (251 aa)
	DCAR_006183	Uncharacterized protein. (81 aa)
	DCAR_006253	DDT domain-containing protein. (82 aa)
	DCAR_006998	Uncharacterized protein. (69 aa)
	DCAR_007499	Uncharacterized protein. (76 aa)
	DCAR_007944	Uncharacterized protein. (162 aa)
	DCAR_008581	LysM domain-containing protein. (105 aa)
	DCAR_000924	CRIB domain-containing protein. (249 aa)
	DCAR_004034	Uncharacterized protein. (468 aa)
	DCAR_004035	Uncharacterized protein. (475 aa)
	DCAR_004728	Uncharacterized protein. (294 aa)
	DCAR_005679	CRIB domain-containing protein. (241 aa)
	DCAR_031318	Uncharacterized protein. (329 aa)
	DCAR_031268	XH domain-containing protein. (255 aa)
	DCAR_029384	Uncharacterized protein. (145 aa)
	DCAR_028854	Uncharacterized protein. (432 aa)
	DCAR_028889	Methyltransf_21 domain-containing protein. (502 aa)
	DCAR_028038	Uncharacterized protein. (494 aa)
	DCAR_026453	Uncharacterized protein. (72 aa)

Your Current Organism:

Daucus carota

NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCAR_000924	DCAR_002642	A0A166FZQ9	A0A162AJL5	CRIB domain-containing protein.	Uncharacterized protein.	0.433
DCAR_000924	DCAR_004728	A0A166FZQ9	A0A166JEA6	CRIB domain-containing protein.	Uncharacterized protein.	0.426
DCAR_000924	DCAR_006183	A0A166FZQ9	A0A166DK63	CRIB domain-containing protein.	Uncharacterized protein.	0.464
DCAR_000924	DCAR_006902	A0A166FZQ9	A0A161X543	CRIB domain-containing protein.	LysM domain-containing protein.	0.454
DCAR_000924	DCAR_006998	A0A166FZQ9	A0A166E6K0	CRIB domain-containing protein.	Uncharacterized protein.	0.468
DCAR_000924	DCAR_007499	A0A166FZQ9	A0A166EJX7	CRIB domain-containing protein.	Uncharacterized protein.	0.468
DCAR_000924	DCAR_008581	A0A166FZQ9	A0A166FG49	CRIB domain-containing protein.	LysM domain-containing protein.	0.487
DCAR_000924	DCAR_009138	A0A166FZQ9	A0A165ZSX7	CRIB domain-containing protein.	Uncharacterized protein.	0.412
DCAR_000924	DCAR_009153	A0A166FZQ9	A0A165ZTB4	CRIB domain-containing protein.	LysM domain-containing protein.	0.472
DCAR_000924	DCAR_009405	A0A166FZQ9	A0A162AGQ0	CRIB domain-containing protein.	Uncharacterized protein.	0.503
DCAR_000924	DCAR_009708	A0A166FZQ9	A0A166AAL0	CRIB domain-containing protein.	Uncharacterized protein.	0.481
DCAR_000924	DCAR_010382	A0A166FZQ9	A0A166AQ95	CRIB domain-containing protein.	zf-XS domain-containing protein.	0.432
DCAR_000924	DCAR_010387	A0A166FZQ9	A0A162AIN7	CRIB domain-containing protein.	zf-XS domain-containing protein.	0.421
DCAR_000924	DCAR_011323	A0A166FZQ9	A0A166BAJ2	CRIB domain-containing protein.	Uncharacterized protein.	0.490
DCAR_000924	DCAR_012333	A0A166FZQ9	A0A161Y321	CRIB domain-containing protein.	XH domain-containing protein.	0.412
DCAR_000924	DCAR_015108	A0A166FZQ9	A0A162A9M4	CRIB domain-containing protein.	Uncharacterized protein.	0.508
DCAR_000924	DCAR_015127	A0A166FZQ9	A0A165WMT8	CRIB domain-containing protein.	Uncharacterized protein.	0.481
DCAR_000924	DCAR_015557	A0A166FZQ9	A0A165A869	CRIB domain-containing protein.	BURP domain-containing protein.	0.489
DCAR_000924	DCAR_015880	A0A166FZQ9	A0A165A1I5	CRIB domain-containing protein.	TF-B3 domain-containing protein.	0.435
DCAR_000924	DCAR_017613	A0A166FZQ9	A0A162A2X3	CRIB domain-containing protein.	AAA domain-containing protein.	0.453

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