28 items (Daucus carota) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCAR_001813	Uncharacterized protein. (82 aa)
	rps7-2	Ribosomal protein S7. (148 aa)
	rps7	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family. (155 aa)
	rps19	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (92 aa)
	rps11	Ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (138 aa)
	DCAR_032325	Uncharacterized protein. (52 aa)
	DCAR_000230	Utp12 domain-containing protein. (143 aa)
	DCAR_004236	Uncharacterized protein. (238 aa)
	DCAR_001396	RRM domain-containing protein. (136 aa)
	DCAR_001275	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (432 aa)
	DCAR_007758	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (150 aa)
	DCAR_007654	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (268 aa)
	DCAR_003251	40S ribosomal protein S27. (86 aa)
	DCAR_005349	Uncharacterized protein. (143 aa)
	DCAR_010482	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (116 aa)
	DCAR_014461	40S ribosomal protein S27. (85 aa)
	DCAR_015262	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	DCAR_021510	RING-type domain-containing protein. (428 aa)
	DCAR_022091	Uncharacterized protein. (87 aa)
	DCAR_022338	Uncharacterized protein. (83 aa)
	DCAR_026112	Uncharacterized protein. (117 aa)
	DCAR_026009	Uncharacterized protein. (118 aa)
	DCAR_024228	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (152 aa)
	DCAR_011267	RRM domain-containing protein. (296 aa)
	DCAR_013408	4Fe-4S ferredoxin-type domain-containing protein; Belongs to the universal ribosomal protein uS11 family. (1236 aa)
	DCAR_026285	RRP7 domain-containing protein. (325 aa)
	DCAR_022656	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (257 aa)
	DCAR_010481	Ribosomal_S7 domain-containing protein. (84 aa)

Your Current Organism:

Daucus carota

NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCAR_000230	DCAR_001396	A0A175Y9B4	A0A166GAH3	Utp12 domain-containing protein.	RRM domain-containing protein.	0.761
DCAR_000230	DCAR_001813	A0A175Y9B4	A0A161YM08	Utp12 domain-containing protein.	Uncharacterized protein.	0.979
DCAR_000230	DCAR_003251	A0A175Y9B4	A0A166D341	Utp12 domain-containing protein.	40S ribosomal protein S27.	0.693
DCAR_000230	DCAR_005349	A0A175Y9B4	A0A166CYW6	Utp12 domain-containing protein.	Uncharacterized protein.	0.901
DCAR_000230	DCAR_007758	A0A175Y9B4	A0A166ESF8	Utp12 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.948
DCAR_000230	DCAR_010481	A0A175Y9B4	A0A161XYC6	Utp12 domain-containing protein.	Ribosomal_S7 domain-containing protein.	0.882
DCAR_000230	DCAR_010482	A0A175Y9B4	A0A166ASD1	Utp12 domain-containing protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.882
DCAR_000230	DCAR_011267	A0A175Y9B4	A0A162AKP0	Utp12 domain-containing protein.	RRM domain-containing protein.	0.761
DCAR_000230	DCAR_013408	A0A175Y9B4	A0A162ADI1	Utp12 domain-containing protein.	4Fe-4S ferredoxin-type domain-containing protein; Belongs to the universal ribosomal protein uS11 family.	0.948
DCAR_000230	DCAR_014461	A0A175Y9B4	A0A165XHS3	Utp12 domain-containing protein.	40S ribosomal protein S27.	0.693
DCAR_000230	DCAR_021510	A0A175Y9B4	A0A164W0X8	Utp12 domain-containing protein.	RING-type domain-containing protein.	0.901
DCAR_000230	DCAR_022338	A0A175Y9B4	A0A164VG85	Utp12 domain-containing protein.	Uncharacterized protein.	0.693
DCAR_000230	DCAR_026009	A0A175Y9B4	A0A164UIP8	Utp12 domain-containing protein.	Uncharacterized protein.	0.901
DCAR_000230	DCAR_026285	A0A175Y9B4	A0A161ZRQ8	Utp12 domain-containing protein.	RRP7 domain-containing protein.	0.995
DCAR_000230	rps11	A0A175Y9B4	A0A175YCC3	Utp12 domain-containing protein.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.913
DCAR_000230	rps7	A0A175Y9B4	A0A175YEN0	Utp12 domain-containing protein.	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family.	0.882
DCAR_000230	rps7-2	A0A175Y9B4	I1TIB6	Utp12 domain-containing protein.	Ribosomal protein S7.	0.882
DCAR_001275	DCAR_007654	A0A166FUZ1	A0A166EPJ3	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.808
DCAR_001275	DCAR_007758	A0A166FUZ1	A0A166ESF8	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.644
DCAR_001275	DCAR_010481	A0A166FUZ1	A0A161XYC6	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family.	Ribosomal_S7 domain-containing protein.	0.894

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