50 items (Daucus carota) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCAR_004236	Uncharacterized protein. (238 aa)
	DCAR_002396	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (145 aa)
	DCAR_001396	RRM domain-containing protein. (136 aa)
	DCAR_001378	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1028 aa)
	DCAR_000603	Uncharacterized protein. (613 aa)
	DCAR_007758	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (150 aa)
	DCAR_007503	Helicase C-terminal domain-containing protein. (218 aa)
	DCAR_007397	Uncharacterized protein. (752 aa)
	DCAR_012372	Uncharacterized protein. (1323 aa)
	DCAR_011737	RIO domain-containing protein. (521 aa)
	DCAR_011494	Uncharacterized protein. (118 aa)
	DCAR_009531	Uncharacterized protein. (1479 aa)
	DCAR_008858	Uncharacterized protein. (282 aa)
	DCAR_012819	Uncharacterized protein. (320 aa)
	DCAR_013032	WD_REPEATS_REGION domain-containing protein. (561 aa)
	DCAR_014109	Kri1_C domain-containing protein. (608 aa)
	DCAR_019081	Sas10 domain-containing protein. (627 aa)
	DCAR_018927	Uncharacterized protein. (2394 aa)
	DCAR_022184	Uncharacterized protein. (895 aa)
	DCAR_025482	Utp12 domain-containing protein. (624 aa)
	DCAR_008420	Uncharacterized protein. (253 aa)
	DCAR_007660	Uncharacterized protein. (754 aa)
	DCAR_005490	S4 RNA-binding domain-containing protein. (397 aa)
	DCAR_011267	RRM domain-containing protein. (296 aa)
	DCAR_013408	4Fe-4S ferredoxin-type domain-containing protein; Belongs to the universal ribosomal protein uS11 family. (1236 aa)
	DCAR_013638	WD_REPEATS_REGION domain-containing protein. (715 aa)
	DCAR_014578	WD_REPEATS_REGION domain-containing protein. (930 aa)
	DCAR_014878	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (333 aa)
	DCAR_019312	WD_REPEATS_REGION domain-containing protein. (537 aa)
	DCAR_018312	Uncharacterized protein. (188 aa)
	DCAR_017823	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (358 aa)
	DCAR_016805	Uncharacterized protein. (976 aa)
	DCAR_020803	WD_REPEATS_REGION domain-containing protein. (949 aa)
	DCAR_024166	Uncharacterized protein. (141 aa)
	DCAR_001813	Uncharacterized protein. (82 aa)
	DCAR_020876	Uncharacterized protein. (529 aa)
	DCAR_007396	Uncharacterized protein. (596 aa)
	DCAR_022602	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (219 aa)
	DCAR_026667	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (220 aa)
	DCAR_027245	Bms1-type G domain-containing protein. (1183 aa)
	DCAR_027508	Sm domain-containing protein. (91 aa)
	DCAR_027698	BP28CT domain-containing protein. (2166 aa)
	DCAR_028088	Uncharacterized protein. (397 aa)
	DCAR_028193	Ubiquitin-like domain-containing protein. (1755 aa)
	DCAR_028813	Ribosomal_L7Ae domain-containing protein. (54 aa)
	DCAR_030710	Uncharacterized protein. (312 aa)
	DCAR_027247	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (81 aa)
	DCAR_029081	Uncharacterized protein. (159 aa)
	rps11	Ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (138 aa)
	DCAR_000230	Utp12 domain-containing protein. (143 aa)

Your Current Organism:

Daucus carota

NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCAR_000230	DCAR_000603	A0A175Y9B4	A0A166FM35	Utp12 domain-containing protein.	Uncharacterized protein.	0.923
DCAR_000230	DCAR_001378	A0A175Y9B4	A0A166G9Z4	Utp12 domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.999
DCAR_000230	DCAR_001396	A0A175Y9B4	A0A166GAH3	Utp12 domain-containing protein.	RRM domain-containing protein.	0.761
DCAR_000230	DCAR_001813	A0A175Y9B4	A0A161YM08	Utp12 domain-containing protein.	Uncharacterized protein.	0.979
DCAR_000230	DCAR_002396	A0A175Y9B4	A0A166H597	Utp12 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.982
DCAR_000230	DCAR_007396	A0A175Y9B4	A0A161XHN6	Utp12 domain-containing protein.	Uncharacterized protein.	0.888
DCAR_000230	DCAR_007397	A0A175Y9B4	A0A166EH65	Utp12 domain-containing protein.	Uncharacterized protein.	0.888
DCAR_000230	DCAR_007503	A0A175Y9B4	A0A166EK14	Utp12 domain-containing protein.	Helicase C-terminal domain-containing protein.	0.970
DCAR_000230	DCAR_007660	A0A175Y9B4	A0A162AWJ8	Utp12 domain-containing protein.	Uncharacterized protein.	0.731
DCAR_000230	DCAR_007758	A0A175Y9B4	A0A166ESF8	Utp12 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.948
DCAR_000230	DCAR_008420	A0A175Y9B4	A0A162AYB7	Utp12 domain-containing protein.	Uncharacterized protein.	0.809
DCAR_000230	DCAR_008858	A0A175Y9B4	A0A165ZJD0	Utp12 domain-containing protein.	Uncharacterized protein.	0.987
DCAR_000230	DCAR_009531	A0A175Y9B4	A0A166A5V2	Utp12 domain-containing protein.	Uncharacterized protein.	0.909
DCAR_000230	DCAR_011267	A0A175Y9B4	A0A162AKP0	Utp12 domain-containing protein.	RRM domain-containing protein.	0.761
DCAR_000230	DCAR_011737	A0A175Y9B4	A0A166BWT2	Utp12 domain-containing protein.	RIO domain-containing protein.	0.783
DCAR_000230	DCAR_012372	A0A175Y9B4	A0A166CDA9	Utp12 domain-containing protein.	Uncharacterized protein.	0.970
DCAR_000230	DCAR_012819	A0A175Y9B4	A0A165ZAW0	Utp12 domain-containing protein.	Uncharacterized protein.	0.987
DCAR_000230	DCAR_013408	A0A175Y9B4	A0A162ADI1	Utp12 domain-containing protein.	4Fe-4S ferredoxin-type domain-containing protein; Belongs to the universal ribosomal protein uS11 family.	0.948
DCAR_000230	DCAR_013638	A0A175Y9B4	A0A162ACY6	Utp12 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.995
DCAR_000230	DCAR_014109	A0A175Y9B4	A0A165XU35	Utp12 domain-containing protein.	Kri1_C domain-containing protein.	0.837

page 1 of 73

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About