8 items (Daucus carota) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCAR_014845	Uncharacterized protein. (278 aa)
	DCAR_028038	Uncharacterized protein. (494 aa)
	DCAR_028854	Uncharacterized protein. (432 aa)
	DCAR_004728	Uncharacterized protein. (294 aa)
	DCAR_004035	Uncharacterized protein. (475 aa)
	DCAR_004034	Uncharacterized protein. (468 aa)
	DCAR_006153	Uncharacterized protein. (251 aa)
	DCAR_023477	Uncharacterized protein. (237 aa)

Your Current Organism:

Daucus carota

NCBI taxonomy Id: 79200
Other names: D. carota subsp. sativus, Daucus carota subsp. sativus, Daucus carota subsp. sativus (Hoffm.) Arcang., Daucus carota var. sativus

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCAR_004728	DCAR_028854	A0A166JEA6	A0A175YJ26	Uncharacterized protein.	Uncharacterized protein.	0.543
DCAR_006153	DCAR_028854	A0A166DJ93	A0A175YJ26	Uncharacterized protein.	Uncharacterized protein.	0.542
DCAR_014845	DCAR_028854	A0A165WZH2	A0A175YJ26	Uncharacterized protein.	Uncharacterized protein.	0.543
DCAR_023477	DCAR_028854	A0A161X200	A0A175YJ26	Uncharacterized protein.	Uncharacterized protein.	0.543
DCAR_028854	DCAR_004728	A0A175YJ26	A0A166JEA6	Uncharacterized protein.	Uncharacterized protein.	0.543
DCAR_028854	DCAR_006153	A0A175YJ26	A0A166DJ93	Uncharacterized protein.	Uncharacterized protein.	0.542
DCAR_028854	DCAR_014845	A0A175YJ26	A0A165WZH2	Uncharacterized protein.	Uncharacterized protein.	0.543
DCAR_028854	DCAR_023477	A0A175YJ26	A0A161X200	Uncharacterized protein.	Uncharacterized protein.	0.543

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