STRINGSTRING
usp7 usp7 rnf128a rnf128a UBB UBB uchl1 uchl1 usp4 usp4 otud7b otud7b rnf41 rnf41 usp30 usp30 zufsp zufsp vcpip1 vcpip1 zranb1a zranb1a uchl3 uchl3 josd1 josd1 usp2b usp2b usp38 usp38 otud5b otud5b trim63b trim63b usp48 usp48 otud5a otud5a usp24 usp24 usp46 usp46 josd2 josd2 usp2a usp2a usp25 usp25 cylda cylda usp5 usp5 usp8 usp8 shprh shprh otud6b otud6b usp47 usp47 uvssa uvssa otud1 otud1 usp43a usp43a ubc ubc ubb ubb usp28 usp28
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
usp7Ubiquitin-specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1110 aa)
rnf128aRing finger protein 128a. (389 aa)
UBBSi:ch211-202a12.4. (459 aa)
uchl1Ubiquitin carboxyl-terminal hydrolase. (218 aa)
usp4Ubiquitin-specific peptidase 4 (proto-oncogene); Belongs to the peptidase C19 family. (1009 aa)
otud7bOTU deubiquitinase 7B. (917 aa)
rnf41E3 ubiquitin-protein ligase NRDP1; Acts as E3 ubiquitin-protein ligase and regulates the degradation of target proteins. (318 aa)
usp30Ubiquitin carboxyl-terminal hydrolase 30; Deubiquitinating enzyme that acts as a key inhibitor of mitophagy by counteracting the action of parkin (PRKN). (491 aa)
zufspZinc finger-containing ubiquitin peptidase 1. (608 aa)
vcpip1Valosin-containing protein (p97)/p47 complex-interacting protein 1. (1108 aa)
zranb1aZinc finger, RAN-binding domain-containing 1a. (666 aa)
uchl3Ubiquitin carboxyl-terminal hydrolase. (230 aa)
josd1Josephin domain-containing 1. (235 aa)
usp2bUbiquitin carboxyl-terminal hydrolase. (398 aa)
usp38Ubiquitin-specific peptidase 38; Belongs to the peptidase C19 family. (1014 aa)
otud5bOTU deubiquitinase 5b. (537 aa)
trim63bTripartite motif-containing 63b. (348 aa)
usp48Ubiquitin-specific peptidase 48; Belongs to the peptidase C19 family. (1092 aa)
otud5aOTU domain-containing protein 5-A; Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro) (By similarity). (560 aa)
usp24Ubiquitin-specific peptidase 24. (1648 aa)
usp46Ubiquitin carboxyl-terminal hydrolase 46; Deubiquitinating enzyme that plays a role in behavior, possibly by regulating GABA action (By similarity). Has almost no deubiquitinating activity by itself and requires the interaction with wdr48 to have a high activity (By similarity). (370 aa)
josd2Josephin domain-containing 2. (184 aa)
usp2aUbiquitin carboxyl-terminal hydrolase. (394 aa)
usp25Ubiquitin-specific peptidase 25; Belongs to the peptidase C19 family. (1072 aa)
cyldaCylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family. (951 aa)
usp5Ubiquitin carboxyl-terminal hydrolase. (834 aa)
usp8Ubiquitin-specific peptidase 8; Belongs to the peptidase C19 family. (1067 aa)
shprhSNF2 histone linker PHD RING helicase. (1644 aa)
otud6bDeubiquitinase OTUD6B; Deubiquitinating enzyme that may play a role in the ubiquitin-dependent regulation of different cellular processes. (293 aa)
usp47Ubiquitin-specific peptidase 47; Belongs to the peptidase C19 family. (1354 aa)
uvssaUV-stimulated scaffold protein A; Factor involved in transcription-coupled nucleotide excision repair (TC-NER) in response to UV damage. TC-NER allows RNA polymerase II-blocking lesions to be rapidly removed from the transcribed strand of active genes (By similarity); Belongs to the UVSSA family. (721 aa)
otud1OTU deubiquitinase 1. (412 aa)
usp43aUbiquitin-specific peptidase 43a; Belongs to the peptidase C19 family. (1122 aa)
ubcUbiquitin C. (533 aa)
ubbUbiquitin B. (610 aa)
usp28Ubiquitin-specific peptidase 28; Belongs to the peptidase C19 family. (1223 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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