10 items (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	psma8	Proteasome subunit alpha type. (251 aa)
	psma5	Proteasome subunit alpha type. (241 aa)
	psmb1	Proteasome subunit beta. (237 aa)
	psmb3	Proteasome subunit beta. (205 aa)
	psmb6	Proteasome subunit beta. (232 aa)
	psmc4	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family. (418 aa)
	psmb2	Proteasome subunit beta. (199 aa)
	psmb4	Proteasome subunit beta; Belongs to the peptidase T1B family. (256 aa)
	si:rp71-45k5.4	Proteasome subunit alpha type. (234 aa)
	psma1	Proteasome subunit alpha type. (262 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
psma1	psma5	ENSDARP00000134179	ENSDARP00000009133	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psma8	ENSDARP00000134179	ENSDARP00000006445	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psmb1	ENSDARP00000134179	ENSDARP00000011778	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma1	psmb2	ENSDARP00000134179	ENSDARP00000041113	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma1	psmb3	ENSDARP00000134179	ENSDARP00000013624	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma1	psmb4	ENSDARP00000134179	ENSDARP00000117990	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
psma1	psmb6	ENSDARP00000134179	ENSDARP00000025226	Proteasome subunit alpha type.	Proteasome subunit beta.	0.995
psma1	psmc4	ENSDARP00000134179	ENSDARP00000034904	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.	0.996
psma1	si:rp71-45k5.4	ENSDARP00000134179	ENSDARP00000127697	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.993
psma5	psma1	ENSDARP00000009133	ENSDARP00000134179	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma5	psma8	ENSDARP00000009133	ENSDARP00000006445	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma5	psmb1	ENSDARP00000009133	ENSDARP00000011778	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma5	psmb2	ENSDARP00000009133	ENSDARP00000041113	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma5	psmb3	ENSDARP00000009133	ENSDARP00000013624	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma5	psmb4	ENSDARP00000009133	ENSDARP00000117990	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
psma5	psmb6	ENSDARP00000009133	ENSDARP00000025226	Proteasome subunit alpha type.	Proteasome subunit beta.	0.989
psma5	psmc4	ENSDARP00000009133	ENSDARP00000034904	Proteasome subunit alpha type.	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.	0.999
psma5	si:rp71-45k5.4	ENSDARP00000009133	ENSDARP00000127697	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.993
psma8	psma1	ENSDARP00000006445	ENSDARP00000134179	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma8	psma5	ENSDARP00000006445	ENSDARP00000009133	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999

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