(11 nodes) EMC complex network (Danio rerio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mmgt1	Membrane magnesium transporter 1; Mediates Mg(2+) transport. (130 aa)
	emc2	ER membrane protein complex subunit 2; Belongs to the EMC2 family. (297 aa)
	emc8	ER membrane protein complex subunit 8. (202 aa)
	emc7	ER membrane protein complex subunit 7; Belongs to the EMC7 family. (237 aa)
	zgc:86609	ER membrane protein complex subunit 3; Belongs to the EMC3 family. (253 aa)
	emc6	ER membrane protein complex subunit 6; Belongs to the EMC6 family. (110 aa)
	emc10	ER membrane protein complex subunit 10; Belongs to the EMC10 family. (257 aa)
	emc1	ER membrane protein complex subunit 1. (964 aa)
	emc3	ER membrane protein complex subunit 3. (261 aa)
	emc4-2	ER membrane protein complex subunit 4; May mediate anti-apoptotic activity. (66 aa)
	zgc:195050	Zgc:195050. (187 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
emc1	emc10	ENSDARP00000095043	ENSDARP00000071497	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 10; Belongs to the EMC10 family.	0.980
emc1	emc2	ENSDARP00000095043	ENSDARP00000006378	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 2; Belongs to the EMC2 family.	0.999
emc1	emc3	ENSDARP00000095043	ENSDARP00000106382	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 3.	0.990
emc1	emc4-2	ENSDARP00000095043	ENSDARP00000139558	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 4; May mediate anti-apoptotic activity.	0.993
emc1	emc6	ENSDARP00000095043	ENSDARP00000051134	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 6; Belongs to the EMC6 family.	0.996
emc1	emc7	ENSDARP00000095043	ENSDARP00000024849	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 7; Belongs to the EMC7 family.	0.994
emc1	emc8	ENSDARP00000095043	ENSDARP00000013605	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 8.	0.989
emc1	mmgt1	ENSDARP00000095043	ENSDARP00000005525	ER membrane protein complex subunit 1.	Membrane magnesium transporter 1; Mediates Mg(2+) transport.	0.997
emc1	zgc:195050	ENSDARP00000095043	ENSDARP00000139844	ER membrane protein complex subunit 1.	Zgc:195050.	0.956
emc1	zgc:86609	ENSDARP00000095043	ENSDARP00000046711	ER membrane protein complex subunit 1.	ER membrane protein complex subunit 3; Belongs to the EMC3 family.	0.968
emc10	emc1	ENSDARP00000071497	ENSDARP00000095043	ER membrane protein complex subunit 10; Belongs to the EMC10 family.	ER membrane protein complex subunit 1.	0.980
emc10	emc2	ENSDARP00000071497	ENSDARP00000006378	ER membrane protein complex subunit 10; Belongs to the EMC10 family.	ER membrane protein complex subunit 2; Belongs to the EMC2 family.	0.995
emc10	emc3	ENSDARP00000071497	ENSDARP00000106382	ER membrane protein complex subunit 10; Belongs to the EMC10 family.	ER membrane protein complex subunit 3.	0.992
emc10	emc4-2	ENSDARP00000071497	ENSDARP00000139558	ER membrane protein complex subunit 10; Belongs to the EMC10 family.	ER membrane protein complex subunit 4; May mediate anti-apoptotic activity.	0.974
emc10	emc6	ENSDARP00000071497	ENSDARP00000051134	ER membrane protein complex subunit 10; Belongs to the EMC10 family.	ER membrane protein complex subunit 6; Belongs to the EMC6 family.	0.988
emc10	emc7	ENSDARP00000071497	ENSDARP00000024849	ER membrane protein complex subunit 10; Belongs to the EMC10 family.	ER membrane protein complex subunit 7; Belongs to the EMC7 family.	0.992
emc10	emc8	ENSDARP00000071497	ENSDARP00000013605	ER membrane protein complex subunit 10; Belongs to the EMC10 family.	ER membrane protein complex subunit 8.	0.993
emc10	mmgt1	ENSDARP00000071497	ENSDARP00000005525	ER membrane protein complex subunit 10; Belongs to the EMC10 family.	Membrane magnesium transporter 1; Mediates Mg(2+) transport.	0.985
emc10	zgc:195050	ENSDARP00000071497	ENSDARP00000139844	ER membrane protein complex subunit 10; Belongs to the EMC10 family.	Zgc:195050.	0.960
emc10	zgc:86609	ENSDARP00000071497	ENSDARP00000046711	ER membrane protein complex subunit 10; Belongs to the EMC10 family.	ER membrane protein complex subunit 3; Belongs to the EMC3 family.	0.952

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