STRINGSTRING
rd3 rd3 rpgra rpgra cerkl cerkl cdhr1a cdhr1a aipl1 aipl1 eys eys rpgrip1 rpgrip1 si:dkey-44k1.5 si:dkey-44k1.5 prom1a prom1a TULP1 TULP1 eys-2 eys-2 spata7 spata7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rd3Retinal degeneration 3, GUCY2D regulator. (215 aa)
rpgraRetinitis pigmentosa GTPase regulator a. (1698 aa)
cerklCeramide kinase-like. (577 aa)
cdhr1aCadherin-related family member 1; Potential calcium-dependent cell-adhesion protein. (857 aa)
aipl1Aryl hydrocarbon receptor-interacting protein-like 1. (462 aa)
eysProtein eyes shut homolog. (217 aa)
rpgrip1RPGR-interacting protein 1. (1342 aa)
si:dkey-44k1.5Si:dkey-44k1.5. (1354 aa)
prom1aProminin-1-A; May play a role in cell differentiation, proliferation and apoptosis. Binds cholesterol in cholesterol-containing plasma membrane microdomains and may play a role in the organization of the apical plasma membrane in epithelial cells. Involved in regulation of MAPK and Akt signaling pathways (By similarity); Belongs to the prominin family. (849 aa)
TULP1Tubby-related protein 1-like. (318 aa)
eys-2Protein eyes shut homolog; Required to maintain the integrity of photoreceptor cells. Specifically required for normal morphology of the photoreceptor ciliary pocket, and might thus facilitate protein trafficking between the photoreceptor inner and outer segments via the transition zone. Belongs to the EYS family. (296 aa)
spata7Spermatogenesis-associated 7. (500 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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