(17 nodes) Type-2 ice-structuring protein, and Lectin network (Danio rerio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E7F3U7_DANRE	Si:dkey-88n24.7. (369 aa)
	B3DIG2_DANRE	Si:ch211-125e6.11. (146 aa)
	Q5RG08_DANRE	Si:dkey-241l7.3. (153 aa)
	Q5RG14_DANRE	Si:dkey-241l7.6. (152 aa)
	Q5RFX3_DANRE	Si:ch211-282j17.2. (366 aa)
	zgc:172053	Zgc:172053 protein. (151 aa)
	B8JM28_DANRE	Si:ch73-343l4.5. (107 aa)
	Q5RG16_DANRE	Si:dkey-241l7.4. (153 aa)
	A5WUI3_DANRE	Si:dkey-83f18.4. (364 aa)
	Q5RFX1_DANRE	Si:ch211-282j17.3. (370 aa)
	F1R3Z3_DANRE	Si:ch73-343l4.6. (113 aa)
	A5WUG7_DANRE	Si:dkey-83f18.2. (360 aa)
	B8JM29_DANRE	Si:ch73-343l4.6. (107 aa)
	A5WUJ2_DANRE	Si:dkey-83f18.9. (367 aa)
	A5WUH4_DANRE	Si:dkey-83f18.6. (292 aa)
	ENSDARP00000141641	C-type lectin domain-containing protein. (206 aa)
	ENSDARP00000142290	Si:dkey-241l7.2. (153 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B8JM28_DANRE	ENSDARP00000142290	ENSDARP00000102420	ENSDARP00000142290	Si:ch73-343l4.5.	Si:dkey-241l7.2.	0.500
B8JM28_DANRE	Q5RG08_DANRE	ENSDARP00000102420	ENSDARP00000060457	Si:ch73-343l4.5.	Si:dkey-241l7.3.	0.500
B8JM28_DANRE	Q5RG14_DANRE	ENSDARP00000102420	ENSDARP00000060465	Si:ch73-343l4.5.	Si:dkey-241l7.6.	0.496
B8JM28_DANRE	Q5RG16_DANRE	ENSDARP00000102420	ENSDARP00000109765	Si:ch73-343l4.5.	Si:dkey-241l7.4.	0.500
B8JM29_DANRE	ENSDARP00000142290	ENSDARP00000120180	ENSDARP00000142290	Si:ch73-343l4.6.	Si:dkey-241l7.2.	0.494
B8JM29_DANRE	Q5RG08_DANRE	ENSDARP00000120180	ENSDARP00000060457	Si:ch73-343l4.6.	Si:dkey-241l7.3.	0.491
B8JM29_DANRE	Q5RG14_DANRE	ENSDARP00000120180	ENSDARP00000060465	Si:ch73-343l4.6.	Si:dkey-241l7.6.	0.489
B8JM29_DANRE	Q5RG16_DANRE	ENSDARP00000120180	ENSDARP00000109765	Si:ch73-343l4.6.	Si:dkey-241l7.4.	0.489
ENSDARP00000142290	B8JM28_DANRE	ENSDARP00000142290	ENSDARP00000102420	Si:dkey-241l7.2.	Si:ch73-343l4.5.	0.500
ENSDARP00000142290	B8JM29_DANRE	ENSDARP00000142290	ENSDARP00000120180	Si:dkey-241l7.2.	Si:ch73-343l4.6.	0.494
F1R3Z3_DANRE	Q5RG14_DANRE	ENSDARP00000116210	ENSDARP00000060465	Si:ch73-343l4.6.	Si:dkey-241l7.6.	0.504
Q5RG08_DANRE	B8JM28_DANRE	ENSDARP00000060457	ENSDARP00000102420	Si:dkey-241l7.3.	Si:ch73-343l4.5.	0.500
Q5RG08_DANRE	B8JM29_DANRE	ENSDARP00000060457	ENSDARP00000120180	Si:dkey-241l7.3.	Si:ch73-343l4.6.	0.491
Q5RG14_DANRE	B8JM28_DANRE	ENSDARP00000060465	ENSDARP00000102420	Si:dkey-241l7.6.	Si:ch73-343l4.5.	0.496
Q5RG14_DANRE	B8JM29_DANRE	ENSDARP00000060465	ENSDARP00000120180	Si:dkey-241l7.6.	Si:ch73-343l4.6.	0.489
Q5RG14_DANRE	F1R3Z3_DANRE	ENSDARP00000060465	ENSDARP00000116210	Si:dkey-241l7.6.	Si:ch73-343l4.6.	0.504
Q5RG16_DANRE	B8JM28_DANRE	ENSDARP00000109765	ENSDARP00000102420	Si:dkey-241l7.4.	Si:ch73-343l4.5.	0.500
Q5RG16_DANRE	B8JM29_DANRE	ENSDARP00000109765	ENSDARP00000120180	Si:dkey-241l7.4.	Si:ch73-343l4.6.	0.489

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