STRINGSTRING
tomm40 tomm40 mterf3 mterf3 pink1 pink1 UBB UBB map1lc3a map1lc3a vdac1 vdac1 tomm22 tomm22 tomm5 tomm5 atg12 atg12 tomm70a tomm70a sqstm1 sqstm1 mfn2 mfn2 atg5 atg5 tomm6 tomm6 rps27a rps27a map1lc3b map1lc3b tomm20b tomm20b ubc ubc mfn1b mfn1b ubb ubb prkn prkn
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tomm40Translocase of Outer mitochondrial membrane 40 homolog (Yeast). (344 aa)
mterf3Mitochondrial transcription termination factor 3. (402 aa)
pink1PTEN-induced kinase 1. (574 aa)
UBBSi:ch211-202a12.4. (459 aa)
map1lc3aMicrotubule-associated protein 1 light chain 3 alpha. (121 aa)
vdac1Voltage-dependent anion channel 1. (283 aa)
tomm22Translocase of Outer mitochondrial membrane 22 homolog (Yeast). (134 aa)
tomm5Translocase of outer mitochondrial membrane 5 homolog (yeast). (51 aa)
atg12Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (120 aa)
tomm70aTranslocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae). (579 aa)
sqstm1Sequestosome 1. (452 aa)
mfn2Mitofusin 2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (757 aa)
atg5Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
tomm6Translocase of outer mitochondrial membrane 6 homolog (yeast). (63 aa)
rps27aRibosomal protein S27a. (156 aa)
map1lc3bMicrotubule-associated protein 1 light chain 3 beta. (122 aa)
tomm20bMitochondrial import receptor subunit TOM20 homolog B; Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with tom22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the tom40 translocation pore (By similarity). (146 aa)
ubcUbiquitin C. (533 aa)
mfn1bMitofusin 1b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (745 aa)
ubbUbiquitin B. (610 aa)
prknE3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (458 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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