STRINGSTRING
tnfb tnfb acod1 acod1 ccr7 ccr7 zgc:171778 zgc:171778 ptprc ptprc irg1l irg1l phb phb hpxb hpxb il17a/f1 il17a/f1 il1b il1b zp3 zp3 zp3.2 zp3.2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tnfbTumor necrosis factor b (TNF superfamily, member 2). (242 aa)
acod1Aconitate decarboxylase 1. (477 aa)
ccr7Chemokine (C-C motif) receptor 7; Belongs to the G-protein coupled receptor 1 family. (385 aa)
zgc:171778Zona pellucida glycoprotein 3, tandem duplicate 2. (432 aa)
ptprcProtein tyrosine phosphatase receptor type C. (1130 aa)
irg1lImmunoresponsive gene 1,-like. (498 aa)
phbProhibitin. (271 aa)
hpxbHemopexin b. (168 aa)
il17a/f1Interleukin 17a/f1. (153 aa)
il1bInterleukin-1. (284 aa)
zp3Zona pellucida glycoprotein 3, tandem duplicate 2. (431 aa)
zp3.2Zona pellucida glycoprotein 3, tandem duplicate 2. (427 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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