STRINGSTRING
sh3tc2 sh3tc2 cdh2 cdh2 sox9a sox9a foxa2 foxa2 smo smo eif2b3 eif2b3 mdkb mdkb fgf8a fgf8a b4galt6 b4galt6 dag1 dag1 phgdh phgdh mettl3 mettl3 pes pes itgb4 itgb4 nkx6.1 nkx6.1 prdm8 prdm8 c1qa c1qa abl2 abl2 tspan2a tspan2a dctn2 dctn2 ttc21b ttc21b xpr1b xpr1b notch1b notch1b fgf5 fgf5 plp1b plp1b mdka mdka acy3.1 acy3.1 gpr157 gpr157 shhb shhb eif2b2 eif2b2 tgfb1a tgfb1a fgf16 fgf16 egr2b egr2b sox9b sox9b aspa aspa dusp10 dusp10 vtnb vtnb leo1 leo1 vtna vtna egr2a egr2a cdk5 cdk5 ilk ilk ihha ihha ihhb ihhb plpp3 plpp3 crb2a crb2a gpr17 gpr17 mxra8b mxra8b mxra8a mxra8a xpr1a xpr1a wasf3b wasf3b ppp3r1b ppp3r1b zgc:109889 zgc:109889 mettl14 mettl14 pick1 pick1 nrros nrros nab2 nab2 eif2b5 eif2b5 sox10 sox10 ror2 ror2 abcd1 abcd1 SH3TC1 SH3TC1 eif2b4 eif2b4 fa2h fa2h adgrg2a adgrg2a prdm8b prdm8b acy3.2 acy3.2 pard3ab pard3ab gle1 gle1 wasf3a wasf3a ercc2 ercc2 lef1 lef1 phox2ba phox2ba ppp3r1a ppp3r1a adgrg6 adgrg6 cdkn2c cdkn2c ror1 ror1 E9QHS4_DANRE E9QHS4_DANRE nf1b nf1b F1QB00_DANRE F1QB00_DANRE adgrg4b adgrg4b tgfb1b tgfb1b cspg5a cspg5a abl1 abl1 shha shha I3ITM8_DANRE I3ITM8_DANRE nf1a nf1a ptprz1a ptprz1a phox2bb phox2bb appa appa nkx2.2b nkx2.2b crb2b crb2b dner dner fgf3 fgf3 mib1 mib1 ENSDARP00000134315 ENSDARP00000134315 plp1a plp1a crb1 crb1 ENSDARP00000136668 ENSDARP00000136668 notch1a notch1a nkx6.2 nkx6.2 adgrg4a adgrg4a znf16l znf16l ptprz1b ptprz1b tenm4 tenm4 Reln Reln tspan2b tspan2b csf1ra csf1ra cnp cnp cntn2 cntn2 ENSDARP00000151567 ENSDARP00000151567 nkx2.2a nkx2.2a PARD3 PARD3 eif2b1 eif2b1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sh3tc2SH3 domain and tetratricopeptide repeats 2. (1407 aa)
cdh2Cadherin-2; Calcium-dependent cell adhesion protein; preferentially mediates homotypic cell-cell adhesion (By similarity). Cadherins contribute to the sorting of heterogeneous cell types, and thereby play an important role during embryonic development. Required for normal neural tube morphogenesis. Required to allow mid- and hindbrain neurons to reach and maintain their appropriate positions within the neural tube by restricting neuronal motility within the embryonic mid- and hindbrain. (893 aa)
sox9aHMG box transcription factor Sox9a. (462 aa)
foxa2Forkhead box protein A2; May play a crucial role in specification of both the axial mesendoderm and the ventral nervous system. (409 aa)
smoSmoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (822 aa)
eif2b3Eukaryotic translation initiation factor 2B, subunit 3 gamma. (453 aa)
mdkbMidkine-related growth factor Mdk2. (147 aa)
fgf8aFibroblast growth factor 8; Plays an important role in the regulation of embryonic development, cell proliferation, cell differentiation and cell migration (By similarity). Required for Kupffer's vesicle ciliogenesis. (210 aa)
b4galt6UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6. (381 aa)
dag1Dystroglycan 1. (866 aa)
phgdhD-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (528 aa)
mettl3N6-adenosine-methyltransferase subunit METTL3; The METTL3-METTL14 heterodimer forms a N6-methyltransferase complex that methylates adenosine residues at the N(6) position of some RNAs and regulates various processes such as the circadian clock, differentiation of embryonic and hematopoietic stem cells, cortical neurogenesis, response to DNA damage, differentiation of T-cells and primary miRNA processing. In the heterodimer formed with mettl14, mettl3 constitutes the catalytic core (By similarity). N6-methyladenosine (m6A), which takes place at the 5'-[AG]GAC-3' consensus sites of some [...] (584 aa)
pesPescadillo; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (583 aa)
itgb4Integrin beta. (1893 aa)
nkx6.1NK6 homeobox 1. (312 aa)
prdm8PR domain-containing 8. (502 aa)
c1qaComplement component 1, q subcomponent, A chain. (247 aa)
abl2Tyrosine-protein kinase. (1135 aa)
tspan2aTetraspanin. (211 aa)
dctn2Dynactin subunit 2; Modulates cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organization during mitosis. Involved in anchoring microtubules to centrosomes. May play a role in synapse formation during brain development (By similarity). (405 aa)
ttc21bTetratricopeptide repeat domain 21B. (1321 aa)
xpr1bXenotropic and polytropic retrovirus receptor 1 homolog; Plays a role in phosphate homeostasis. Mediates phosphate export from the cell. Binds inositol hexakisphosphate (Ins6P) and similar inositol polyphosphates, such as 5-diphospho- inositol pentakisphosphate (5-InsP7); these are important intracellular signaling molecules (By similarity). (693 aa)
notch1bNotch receptor 1b. (2465 aa)
fgf5Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (225 aa)
plp1bProteolipid protein 1b. (279 aa)
mdkaMidkine-related growth factor Mdk1. (146 aa)
acy3.1N-acyl-aromatic-L-amino acid amidohydrolase (carboxylate-forming) A; Plays an important role in deacetylating mercapturic acids in kidney proximal tubules; Belongs to the AspA/AstE family. Aspartoacylase subfamily. (328 aa)
gpr157G protein-coupled receptor 157. (325 aa)
shhbTiggy-winkle hedgehog protein C-product; Intercellular signal essential for a variety of patterning events during development. Involved in dorso-ventral patterning of the brain and in early patterning of the developing eyes. (416 aa)
eif2b2Eukaryotic translation initiation factor 2B, subunit 2 beta; Belongs to the eIF-2B alpha/beta/delta subunits family. (355 aa)
tgfb1aTransforming growth factor beta; Belongs to the TGF-beta family. (377 aa)
fgf16Fibroblast growth factor 16; Plays a crucial role in pectoral fin bud outgrowth. Belongs to the heparin-binding growth factors family. (203 aa)
egr2bEarly growth response protein 2b; Sequence-specific DNA-binding transcription factor. Binds to two specific DNA sites located in the promoter region of HOXA4. (412 aa)
sox9bHMG box transcription factor Sox9b. (407 aa)
aspaAspartoacylase; Catalyzes the deacetylation of N-acetylaspartic acid (NAA) to produce acetate and L-aspartate; Belongs to the AspA/AstE family. Aspartoacylase subfamily. (315 aa)
dusp10Dual-specificity phosphatase 10. (459 aa)
vtnbVitronectin b. (449 aa)
leo1RNA polymerase-associated protein LEO1; Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3) (By similarity). PAF1C seems to be required for multiple steps in cardiac formation. Involved in heart development and required for differentiation of the atrioventricular boundary. Required for neural crest cell development. (696 aa)
vtnaVitronectin a. (514 aa)
egr2aEarly growth response 2a. (393 aa)
cdk5Cyclin-dependent protein kinase 5; Belongs to the protein kinase superfamily. (292 aa)
ilkIntegrin-linked kinase. (452 aa)
ihhaHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (413 aa)
ihhbIndian hedgehog B protein C-product; Intercellular signal essential for a variety of patterning events during development. Signal produced by the notochord that induces somite patterning and muscle pioneer differentiation. (412 aa)
plpp3Phospholipid phosphatase 3. (312 aa)
crb2aCrumbs cell polarity complex component 2a. (1466 aa)
gpr17G_PROTEIN_RECEP_F1_2 domain-containing protein. (339 aa)
mxra8bMatrix-remodelling-associated 8b. (434 aa)
mxra8aMatrix-remodelling-associated 8a. (447 aa)
xpr1aXenotropic and polytropic retrovirus receptor 1a. (692 aa)
wasf3bWASP family member 3b. (481 aa)
ppp3r1bProtein phosphatase 3 (formerly 2B), regulatory s1ubunit B, alpha isoform, b. (170 aa)
zgc:109889Zgc:109889 protein. (279 aa)
mettl14N6-adenosine-methyltransferase non-catalytic subunit; The METTL3-METTL14 heterodimer forms a N6-methyltransferase complex that methylates adenosine residues at the N(6) position of some mRNAs and regulates the circadian clock, differentiation of embryonic stem cells and cortical neurogenesis. In the heterodimer formed with mettl3, mettl14 constitutes the RNA-binding scaffold that recognizes the substrate rather than the catalytic core. N6-methyladenosine (m6A), which takes place at the 5'-[AG]GAC-3' consensus sites of some mRNAs, plays a role in mRNA stability and processing. (455 aa)
pick1Protein-interacting with prkca 1. (406 aa)
nrrosTransforming growth factor beta activator LRRC33; Key regulator of transforming growth factor beta-1 (TGFB1) specifically required for microglia function in the nervous system. Required for activation of latent TGF-beta-1 in macrophages and microglia: associates specifically via disulfide bonds with the Latency-associated peptide (LAP), which is the regulatory chain of TGFB1, and regulates integrin-dependent activation of TGF-beta-1. TGF- beta-1 activation mediated by lrrc33/nrros is highly localized: there is little spreading of TGF-beta-1 activated from one microglial cell to neighbo [...] (685 aa)
nab2NGFI-A-binding protein 2 (EGR1 binding protein 2). (491 aa)
eif2b5Eukaryotic translation initiation factor 2B, subunit 5 epsilon. (607 aa)
sox10HMG-box transcription factor Sox10. (485 aa)
ror2Receptor tyrosine kinase-like orphan receptor 2; Belongs to the protein kinase superfamily. Tyr protein kinase family. ROR subfamily. (939 aa)
abcd1ATP-binding cassette sub-family D member 1; Plays a role in the transport of free very-long-chain fatty acids (VLCFAs) as well as their CoA-esters across the peroxisomal membrane by acting as an ATP-specific binding subunit releasing ADP after ATP hydrolysis (By similarity). Involved in oligodendrocyte patterning and myelination. (766 aa)
SH3TC1SH3 domain and tetratricopeptide repeats 1. (1322 aa)
eif2b4Eukaryotic translation initiation factor 2B, subunit 4 delta; Belongs to the eIF-2B alpha/beta/delta subunits family. (540 aa)
fa2hFatty acid 2-hydroxylase; Catalyzes stereospecific hydroxylation of free fatty acids at the C-2 position to produce (R)-2-hydroxy fatty acids, which are building blocks of sphingolipids and glycosphingolipids common in neural tissue and epidermis. Plays an essential role in the synthesis of galactosphingolipids of the myelin sheath. Responsible for the synthesis of sphingolipids and glycosphingolipids involved in the formation of epidermal lamellar bodies critical for skin permeability barrier. Participates in the synthesis of glycosphingolipids and a fraction of type II wax diesters i [...] (377 aa)
adgrg2aAdhesion G protein-coupled receptor G2a; Belongs to the G-protein coupled receptor 2 family. (1037 aa)
prdm8bPR domain-containing 8b. (570 aa)
acy3.2N-acyl-aromatic-L-amino acid amidohydrolase (carboxylate-forming) B; Plays an important role in deacetylating mercapturic acids in kidney proximal tubules; Belongs to the AspA/AstE family. Aspartoacylase subfamily. (314 aa)
pard3abPar-3 family cell polarity regulator alpha, b. (1332 aa)
gle1Nucleoporin GLE1; Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. May be involved in the terminal step of the mRNA transport through the nuclear pore complex (NPC) (By similarity). (694 aa)
wasf3aWASP family member 3a. (433 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
lef1Lymphocyte enhancer binding factor 1 Lef1. (365 aa)
phox2baPaired-like homeobox 2Ba. (155 aa)
ppp3r1aProtein phosphatase 3, regulatory subunit B, alpha a. (170 aa)
adgrg6Adhesion G-protein coupled receptor G6; G-protein coupled receptor which is activated by type IV collagen, a major constituent of the basement membrane. Couples to G(i)-proteins as well as G(s)-proteins. Essential for normal differentiation of promyelinating Schwann cells and for normal myelination of axons. Plays also a role in inner ear development. (1240 aa)
cdkn2cCyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4). (170 aa)
ror1Receptor tyrosine kinase-like orphan receptor 1; Belongs to the protein kinase superfamily. Tyr protein kinase family. (950 aa)
E9QHS4_DANRESi:dkey-175m17.7. (892 aa)
nf1bNeurofibromin 1b. (2759 aa)
F1QB00_DANRESi:dkey-259j3.5; Belongs to the G-protein coupled receptor 2 family. (720 aa)
adgrg4bAdhesion G protein-coupled receptor G4b; Belongs to the G-protein coupled receptor 2 family. (522 aa)
tgfb1bTransforming growth factor beta; Belongs to the TGF-beta family. (379 aa)
cspg5aChondroitin sulfate proteoglycan 5a. (532 aa)
abl1Tyrosine-protein kinase. (1081 aa)
shhaSonic hedgehog protein A N-product; Sonic hedgehog protein: The C-terminal part of the sonic hedgehog protein precursor displays an autoproteolysis and a cholesterol transferase activity (By similarity). Both activities result in the cleavage of the full-length protein into two parts (ShhN and ShhC) followed by the covalent attachment of a cholesterol moiety to the C-terminal of the newly generated ShhN (By similarity). Both activities occur in the reticulum endoplasmic (By similarity). Once cleaved, ShhC is degraded in the endoplasmic reticulum (By similarity). (418 aa)
I3ITM8_DANRESi:ch73-362m14.4. (501 aa)
nf1aNeurofibromin 1a. (2759 aa)
ptprz1aProtein tyrosine phosphatase receptor type Z1a. (1837 aa)
phox2bbPaired-like homeobox 2Bb. (284 aa)
appaAmyloid beta (A4) precursor protein a. (194 aa)
nkx2.2bNK2 transcription factor related 2b. (237 aa)
crb2bCrumbs cell polarity complex component 2b. (1010 aa)
dnerDelta/notch-like EGF repeat-containing. (744 aa)
fgf3Fibroblast growth factor 3; Plays an important role in the regulation of embryonic development, cell proliferation, and cell differentiation. Belongs to the heparin-binding growth factors family. (256 aa)
mib1E3 ubiquitin-protein ligase mib1; E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. It thereby participates in many processes regulated by the Notch signaling pathway, such as midline cell fate specification prior to germ layer formation, patterning of sensory cell differentiation in the ear, neurogenesis of the hindbrain and commitment to a secretory fate in the intesti [...] (1041 aa)
ENSDARP00000134315Si:dkeyp-41f9.4. (398 aa)
plp1aProteolipid protein 1a. (245 aa)
crb1Crumbs cell polarity complex component 1. (1428 aa)
ENSDARP00000136668Ncstrn_small domain-containing protein. (599 aa)
notch1aNeurogenic locus notch homolog protein 1; Functions as a receptor for membrane-bound ligands Jagged-1 (JAG1), Jagged-2 (JAG2) and Delta-1 (DLL1) to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. Involved in angiogenesis; negatively regulates endothelial cell proliferation and migration and angiogenic sprouting. Involved in the [...] (2438 aa)
nkx6.2NK6 homeobox 2. (278 aa)
adgrg4aAdhesion G protein-coupled receptor G4a; Belongs to the G-protein coupled receptor 2 family. (1201 aa)
znf16lZinc finger protein 16-like; Probable transcription factor (Probable). Important for development and migration of oligodendrocyte precursor cells, and normal myelination of axons in the central nervous system (CNS). Functions autonomously in oligodendrocytes to promote CNS myelination. Seems to act in parallel with notch3 during oligodendrocyte development. Belongs to the krueppel C2H2-type zinc-finger protein family. (528 aa)
ptprz1bProtein tyrosine phosphatase receptor type Z1b. (1303 aa)
tenm4Teneurin-4; Involved in neural development, regulating the establishment of proper connectivity within the nervous system. May play a role in the establishment of the anterior-posterior axis during gastrulation. Regulates the differentiation of oligodendrocytes and myelination of axons. May function as a cellular signal transducer (By similarity). Belongs to the tenascin family. Teneurin subfamily. (2865 aa)
RelnReelin domain-containing protein. (259 aa)
tspan2bTetraspanin. (227 aa)
csf1raMacrophage colony-stimulating factor 1 receptor; Tyrosine-protein kinase that acts as cell-surface receptor for CSF1 and plays an essential role in the regulation of survival, proliferation and differentiation of hematopoietic precursor cells, especially mononuclear phagocytes, such as macrophages and monocytes. Plays an important role in innate immunity and in inflammatory processes. Plays an important role in the regulation of osteoclast proliferation and differentiation, the regulation of bone resorption, and is required for normal bone development. Promotes reorganization of the ac [...] (977 aa)
cnp2',3'-cyclic nucleotide 3' phosphodiesterase. (443 aa)
cntn2Contactin 2. (1040 aa)
ENSDARP00000151567Uncharacterized protein. (108 aa)
nkx2.2aHomeobox protein Nkx-2.2a; Transcriptional activator involved in the development of insulin-producting beta cells in the endocrine pancreas (By similarity). May also be involved in specifying diencephalic neuromeric boundaries, and in controlling the expression of genes that play a role in axonal guidance. Binds to elements within the NEUROD1 promoter (By similarity). (273 aa)
PARD3Par-3 family cell polarity regulator. (531 aa)
eif2b1Eukaryotic translation initiation factor 2B, subunit 1 alpha; Belongs to the eIF-2B alpha/beta/delta subunits family. (291 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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