STRINGSTRING
smarcd1 smarcd1 arid2 arid2 dpf3 dpf3 smarca2 smarca2 pbrm1 pbrm1 smarcb1a smarcb1a bcl7bb bcl7bb mpnd mpnd actl6a actl6a smarcc2 smarcc2 smarcc1a smarcc1a smarcd2 smarcd2 smarce1 smarce1 leng9 leng9 smarcd3a smarcd3a pbrm1l pbrm1l bcl7a bcl7a smarcb1b smarcb1b actl6b actl6b E7FC48_DANRE E7FC48_DANRE smarcc1b smarcc1b arid1aa arid1aa SMARCA4 SMARCA4 arid1ab arid1ab arid1b arid1b smarcd3b smarcd3b smarca4a smarca4a bcl7ba bcl7ba
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
smarcd1SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily d, member 1. (510 aa)
arid2AT-rich interactive domain 2 (ARID, RFX-like). (1572 aa)
dpf3Zinc finger protein DPF3; Muscle-specific component of the BAF complex, a multiprotein complex involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Specifically binds acetylated lysines on histone 3 and 4. In the complex, it acts as a tissue-specific anchor between histone acetylations and methylations and chromatin remodeling. Belongs to the neuron-specific chromatin remodeling complex (nBAF complex) and may play a role in neural development (By similarity). Plays an essential role in heart and skeletal [...] (391 aa)
smarca2SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily a, member 2. (1568 aa)
pbrm1Polybromo 1. (1627 aa)
smarcb1aSWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A; Involved in chromatin-remodeling. Core component of the BAF (SWI/SNF) complex. This ATP-dependent chromatin-remodeling complex plays important roles in cell proliferation and differentiation, in cellular antiviral activities and inhibition of tumor formation. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex) and may play a role in neural development (By similarity). (373 aa)
bcl7bbB-cell CLL/lymphoma 7 protein family member B-B; Belongs to the BCL7 family. (201 aa)
mpndMPN domain-containing protein; Probable protease (By similarity). Acts as a sensor of N(6)- methyladenosine methylation on DNA (m6A): recognizes and binds m6A DNA, leading to its degradation (By similarity). (458 aa)
actl6aActin-like 6A; Belongs to the actin family. (429 aa)
smarcc2SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily c, member 2. (1036 aa)
smarcc1aSWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily c, member 1a. (1089 aa)
smarcd2SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily d, member 2. (501 aa)
smarce1SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily e, member 1. (420 aa)
leng9Leukocyte receptor cluster (LRC) member 9. (225 aa)
smarcd3aSWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily d, member 3a. (475 aa)
pbrm1lPolybromo 1,-like. (1629 aa)
bcl7aB-cell CLL/lymphoma 7 protein family member A. (202 aa)
smarcb1bSWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family. (370 aa)
actl6bActin-like 6B; Belongs to the actin family. (426 aa)
E7FC48_DANRESi:ch211-168d23.3. (1158 aa)
smarcc1bSWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily c, member 1b. (959 aa)
arid1aaAT-rich interactive domain 1Aa (SWI-like). (2286 aa)
SMARCA4SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4. (1564 aa)
arid1abAT-rich interactive domain 1Ab (SWI-like). (2101 aa)
arid1bAT-rich interactive domain 1B (SWI1-like). (2122 aa)
smarcd3bSWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily d, member 3b. (476 aa)
smarca4aSWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily a, member 4a. (1627 aa)
bcl7baB-cell CLL/lymphoma 7 protein family member B-A; Belongs to the BCL7 family. (203 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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