STRINGSTRING
srpk1a srpk1a yju2 yju2 shq1 shq1 mcts1 mcts1 lsm4 lsm4 snu13b snu13b celf3a celf3a celf1 celf1 srpk1b srpk1b snrpe snrpe znhit2 znhit2 prkdc prkdc eif3hb eif3hb gemin8 gemin8 ptges3a ptges3a pih1d1 pih1d1 snrpd2 snrpd2 khdc4 khdc4 gemin7 gemin7 gemin4 gemin4 usp39 usp39 rps5 rps5 celf2 celf2 sfswap sfswap puf60a puf60a snrpc snrpc xab2 xab2 eif2d eif2d eif4bb eif4bb rpl23a rpl23a celf3b celf3b rpl5a rpl5a rpl38 rpl38 sart3 sart3 sf3a2 sf3a2 mrto4 mrto4 rps28 rps28 adar adar eif4h eif4h dhx9 dhx9 prpf31 prpf31 rpl10 rpl10 prpf8 prpf8 eif3d eif3d snrpd3 snrpd3 eif3c eif3c gemin6 gemin6 trnau1apa trnau1apa psip1a psip1a sf3a3 sf3a3 rps27l rps27l prpf39 prpf39 nufip1 nufip1 mrps7 mrps7 eif4ba eif4ba eif3s6ip eif3s6ip snrpf snrpf clns1a clns1a snrpg snrpg smx5 smx5 rrp7a rrp7a ENSDARP00000131763 ENSDARP00000131763 ago4 ago4 zgc:165603 zgc:165603 xrcc5 xrcc5 bxdc2 bxdc2 eif3ha eif3ha cdc73 cdc73 mrm2 mrm2 eif3ba eif3ba eif3f eif3f srpk3 srpk3 znhit6 znhit6 eif3ja eif3ja setx setx rpsa rpsa nle1 nle1 scaf11 scaf11 rplp0 rplp0 prmt7 prmt7 ythdc1 ythdc1 eif3jb eif3jb ccdc105 ccdc105 rps27.2 rps27.2 ruvbl2 ruvbl2 luc7l luc7l sf3b1 sf3b1 trnau1apb trnau1apb prpf18 prpf18 E9QC92_DANRE E9QC92_DANRE zrsr2 zrsr2 celf4 celf4 cpsf6 cpsf6 eral1 eral1 ddx28 ddx28 prmt5 prmt5 snu13a snu13a isy1 isy1 celf5a celf5a eif3k eif3k zgc:158803 zgc:158803 rpl6 rpl6 luc7l3 luc7l3 prpf19 prpf19 mrps11 mrps11 F1QGR8_DANRE F1QGR8_DANRE snrnp200 snrnp200 polr2d polr2d snrpd3l snrpd3l crnkl1 crnkl1 fastkd2 fastkd2 dhx30 dhx30 pwp2h pwp2h eif3bb eif3bb nop2 nop2 eif3s10 eif3s10 rpl5b rpl5b eif3ea eif3ea prpf3 prpf3 dhx29 dhx29 strap strap coil coil rrs1 rrs1 mrpl20 mrpl20 F1REM4_DANRE F1REM4_DANRE gemin5 gemin5 naf1 naf1 ddx20 ddx20 prpf6 prpf6 nop53 nop53 ENSDARP00000148068 ENSDARP00000148068 ENSDARP00000148783 ENSDARP00000148783 denr denr gemin2 gemin2 sf3a1 sf3a1 ENSDARP00000151160 ENSDARP00000151160 celf5b celf5b ENSDARP00000153382 ENSDARP00000153382 ENSDARP00000153439 ENSDARP00000153439 puf60b puf60b traf7 traf7 ENSDARP00000154119 ENSDARP00000154119 LSM2 LSM2 rpf2 rpf2 abt1 abt1 ruvbl1 ruvbl1 eif6 eif6 nudt21 nudt21 pih1d2 pih1d2 smn1 smn1 eif3i eif3i eif5 eif5 snrpb snrpb eif3m eif3m eif3g eif3g eif2s3 eif2s3 snrpd1 snrpd1 rps27.1 rps27.1 znhit3 znhit3
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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srpk1aSRSF protein kinase 1a. (634 aa)
yju2Splicing factor YJU2; Part of the spliceosome which catalyzes two sequential transesterification reactions, first the excision of the non-coding intron from pre-mRNA and then the ligation of the coding exons to form the mature mRNA. Plays a role in stabilizing the structure of the spliceosome catalytic core and docking of the branch helix into the active site, producing 5'-exon and lariat intron-3'-intermediates (By similarity). May protect cells from TP53-dependent apoptosis upon dsDNA break damage through association with PRP19-CD5L complex ; Belongs to the CWC16 family. YJU2 subfamily. (345 aa)
shq1Protein SHQ1 homolog; Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs); Belongs to the SHQ1 family. (586 aa)
mcts1Malignant T-cell-amplified sequence 1; Plays a role as translation enhancer and involved in cell cycle regulation. (181 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
snu13bRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
celf3aCUGBP Elav-like family member 3; RNA-binding protein that may be involved in the regulation of pre-mRNA alternative splicing; Belongs to the CELF/BRUNOL family. (452 aa)
celf1CUGBP Elav-like family member 1; RNA-binding protein implicated in the regulation of several post-transcriptional events. May be involved in mRNA translation activation and stability (By similarity). Involved in the regulation of muscle-specific splicing of alpha actinin pre-mRNAs via the binding to the UR-repeat element (URE) at the branch point of the non-muscle (NM) exon; Belongs to the CELF/BRUNOL family. (534 aa)
srpk1bSRSF protein kinase 1b. (658 aa)
snrpeSmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (92 aa)
znhit2Zinc finger, HIT-type-containing 2. (522 aa)
prkdcProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4119 aa)
eif3hbEukaryotic translation initiation factor 3 subunit H-B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (333 aa)
gemin8Gem (nuclear organelle)-associated protein 8. (217 aa)
ptges3aProstaglandin E synthase 3a (cytosolic). (159 aa)
pih1d1PIH1 domain-containing protein 1; Involved in the assembly of C/D box small nucleolar ribonucleoprotein (snoRNP) particles (By similarity). Recruits the SWI/SNF complex to the core promoter of rRNA genes and enhances pre- rRNA transcription (By similarity). Mediates interaction of TELO2 with the R2TP complex which is necessary for the stability of MTOR and SMG1 (By similarity). Positively regulates the assembly and activity of the mTORC1 complex (By similarity); Belongs to the PIH1 family. (287 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
khdc4KH homology domain-containing protein 4; RNA-binding protein involved in pre-mRNA splicing. Interacts with the PRP19C/Prp19 complex/NTC/Nineteen complex which is part of the spliceosome. Involved in regulating splice site selection. Binds preferentially RNA with A/C rich sequences and poly-C stretches. (570 aa)
gemin7Gem (nuclear organelle)-associated protein 7. (125 aa)
gemin4Gem (nuclear organelle)-associated protein 4. (1057 aa)
usp39Ubiquitin-specific peptidase 39. (497 aa)
rps5Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (204 aa)
celf2CUGBP Elav-like family member 2; RNA-binding protein implicated in the regulation of several post-transcriptional events. May be involved in pre-mRNA alternative splicing, mRNA translation repression and stability (By similarity). (493 aa)
sfswapSplicing factor SWAP. (958 aa)
puf60aPoly-U-binding-splicing factor a. (519 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. snrpc/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
xab2Similar to Xab2 protein. (851 aa)
eif2dEukaryotic translation initiation factor 2D. (590 aa)
eif4bbEukaryotic translation initiation factor 4Bb. (569 aa)
rpl23aRibosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (155 aa)
celf3bCugbp, Elav-like family member 3b. (442 aa)
rpl5aRibosomal protein L5a. (297 aa)
rpl38Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
sart3Squamous cell carcinoma antigen recognized by T-cells 3; U6 snRNP-binding protein that functions as a recycling factor of the splicing machinery. Promotes the initial reassembly of U4 and U6 snRNPs following their ejection from the spliceosome during its maturation. May also function as a substrate targeting factor for deubiquitinases and mediate the deubiquitination of components of the spliceosome and histones (By similarity). (951 aa)
sf3a2Splicing factor 3a, subunit 2. (278 aa)
mrto4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (242 aa)
rps2840S ribosomal protein S28; Belongs to the eukaryotic ribosomal protein eS28 family. (69 aa)
adarAdenosine deaminase RNA-specific. (1381 aa)
eif4hEukaryotic translation initiation factor 4h. (256 aa)
dhx9DEAH (Asp-Glu-Ala-His) box helicase 9. (1271 aa)
prpf31U4/U6 small nuclear ribonucleoprotein Prp31; Involved in pre-mRNA splicing as component of the spliceosome. Required for the assembly of the U4/U5/U6 tri-snRNP complex, one of the building blocks of the spliceosome. (508 aa)
rpl1060S ribosomal protein L10; Component of the large ribosomal subunit (Probable). Plays a role in the formation of actively translating ribosomes. Plays a role in the embryonic brain development. (215 aa)
prpf8Pre-mRNA-processing factor 8. (2342 aa)
eif3dEukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs. (552 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
eif3cEukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (926 aa)
gemin6Gem (nuclear organelle)-associated protein 6. (137 aa)
trnau1apatRNA selenocysteine 1-associated protein 1; Involved in the early steps of selenocysteine biosynthesis and tRNA(Sec) charging to the later steps resulting in the cotranslational incorporation of selenocysteine into selenoproteins. Belongs to the RRM TRSPAP family. (314 aa)
psip1aPC4 and SFRS1-interacting protein 1a. (413 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
rps27l40S ribosomal protein S27. (84 aa)
prpf39Pre-mRNA-processing factor 39; Involved in pre-mRNA splicing; Belongs to the PRP39 family. (752 aa)
nufip1Nuclear FMR1-interacting protein 1. (302 aa)
mrps728S ribosomal protein S7, mitochondrial; Belongs to the universal ribosomal protein uS7 family. (228 aa)
eif4baEukaryotic translation initiation factor 4Ba. (616 aa)
eif3s6ipEukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (576 aa)
snrpfSmall nuclear ribonucleoprotein polypeptide F. (88 aa)
clns1aChloride channel, nucleotide-sensitive, 1A. (249 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
smx5U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
rrp7aRibosomal RNA-processing 7 homolog A. (280 aa)
ENSDARP00000131763Si:dkey-205h23.2. (439 aa)
ago4Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily. (863 aa)
zgc:165603Zgc:165603 protein. (155 aa)
xrcc5X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (727 aa)
bxdc2Brix domain-containing 2. (383 aa)
eif3haEukaryotic translation initiation factor 3 subunit H-A; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (335 aa)
cdc73Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (530 aa)
mrm2Mitochondrial rRNA methyltransferase 2. (259 aa)
eif3baEukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (681 aa)
eif3fEukaryotic translation initiation factor 3, subunit F; Belongs to the eIF-3 subunit F family. (282 aa)
srpk3SRSF protein kinase 3. (710 aa)
znhit6Zinc finger HIT-type-containing 6. (367 aa)
eif3jaEukaryotic translation initiation factor 3 subunit J-A; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (249 aa)
setxSenataxin. (2368 aa)
rpsa40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (308 aa)
nle1Notchless homolog 1 (Drosophila). (476 aa)
scaf11SR-related CTD-associated factor 11. (1321 aa)
rplp060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10; Belongs to the universal ribosomal protein uL10 family. (316 aa)
prmt7Protein arginine N-methyltransferase 7; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Specifically mediates the symmetric dimethylation of histone H4 'Arg-3' to form H4R3me2s. Plays a role in gene imprinting by being [...] (683 aa)
ythdc1YTH domain-containing 1. (679 aa)
eif3jbEukaryotic translation initiation factor 3 subunit J-B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (264 aa)
ccdc105Coiled-coil domain-containing 105. (461 aa)
rps27.240S ribosomal protein S27. (84 aa)
ruvbl2RuvB-like 2; Has double-stranded DNA-stimulated ATPase activity. Has ATP-dependent DNA helicase (5' to 3') activity suggesting a role in nuclear processes such as recombination and transcription (By similarity). Represses gene activation mediated by beta-catenin. Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome- activated ATPase activity and catalyzes ATP-dependent nucleosome sliding (By similarity). Involved in the endoplasmic reticulum (ER)- associated degradation (ERAD) pathway where it negatively regulates expression of ER stress [...] (463 aa)
luc7lLUC7-like (S. cerevisiae). (364 aa)
sf3b1Splicing factor 3b, subunit 1. (1315 aa)
trnau1apbtRNA selenocysteine 1-associated protein 1-like; Involved in the early steps of selenocysteine biosynthesis and tRNA(Sec) charging to the later steps resulting in the cotranslational incorporation of selenocysteine into selenoproteins. Belongs to the RRM TRSPAP family. (316 aa)
prpf18Pre-mRNA-splicing factor 18; Participates in the second step of pre-mRNA splicing. (342 aa)
E9QC92_DANRESi:ch211-220i18.4; Belongs to the protein kinase superfamily. (440 aa)
zrsr2Zinc finger (CCCH type), RNA-binding motif and serine/arginine-rich 2. (635 aa)
celf4CUGBP Elav-like family member 4; RNA-binding protein that may be implicated in the regulation of pre-mRNA alternative splicing; Belongs to the CELF/BRUNOL family. (520 aa)
cpsf6Cleavage and polyadenylation specificity factor subunit 6; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (558 aa)
eral1GTPase Era, mitochondrial; Probable GTPase that plays a role in the mitochondrial ribosomal small subunit assembly. Specifically binds the 12S mitochondrial rRNA (12S mt-rRNA) to a 33 nucleotide section delineating the 3' terminal stem-loop region. May act as a chaperone that protects the 12S mt-rRNA on the 28S mitoribosomal subunit during ribosomal small subunit assembly (By similarity); Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (447 aa)
ddx28DEAD (Asp-Glu-Ala-Asp) box polypeptide 28. (558 aa)
prmt5Protein arginine N-methyltransferase 5; Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA); Belongs to the class I-like SAM-binding methyltransferase superfamily. (631 aa)
snu13aRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
isy1ISY1-splicing factor homolog. (285 aa)
celf5aCugbp, Elav-like family member 5a. (528 aa)
eif3kEukaryotic translation initiation factor 3 subunit K; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (219 aa)
zgc:158803Zgc:158803 protein. (417 aa)
rpl6Ribosomal protein L6. (265 aa)
luc7l3LUC7-like 3 pre-mRNA-splicing factor. (462 aa)
prpf19PRP19/PSO4 homolog (S. cerevisiae). (505 aa)
mrps11Novel protein similar to mouse and human mitochondrial ribosomal protein S11 (MRPS11); Belongs to the universal ribosomal protein uS11 family. (199 aa)
F1QGR8_DANRESi:dkey-48p11.3. (153 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2134 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (141 aa)
snrpd3lSmall nuclear ribonucleoprotein Sm D3. (128 aa)
crnkl1Crooked neck pre-mRNA-splicing factor 1. (753 aa)
fastkd2FAST kinase domains 2. (629 aa)
dhx30DEAH (Asp-Glu-Ala-His) box helicase 30. (1173 aa)
pwp2hPWP2 small subunit processome component. (937 aa)
eif3bbEukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (667 aa)
nop2NOP2 nucleolar protein homolog (yeast); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (739 aa)
eif3s10Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (1267 aa)
rpl5bRibosomal protein L5b. (296 aa)
eif3eaEukaryotic translation initiation factor 3 subunit E-A; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (446 aa)
prpf3PRP3 pre-mRNA-processing factor 3 homolog (yeast). (699 aa)
dhx29ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1379 aa)
strapSerine/threonine kinase receptor-associated protein. (329 aa)
coilCoilin p80. (532 aa)
rrs1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (346 aa)
mrpl20Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family. (149 aa)
F1REM4_DANRESi:ch211-114c17.1. (669 aa)
gemin5Gem (nuclear organelle)-associated protein 5. (1440 aa)
naf1Nuclear assembly factor 1 homolog (S. cerevisiae). (503 aa)
ddx20Probable ATP-dependent RNA helicase DDX20; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs. Most spliceosomal snRNPs contain a common set of Sm proteins that assemble in a heptameric protein ring on the Sm site of the small nuclear RNA to form the core snRNP. In the cytosol, the Sm proteins are trapped in an inactive complex. The SMN complex triggers the assembly of core snRNPs and their transport to the nucleus. May also pla [...] (811 aa)
prpf6PRP6 pre-mRNA-processing factor 6 homolog (S. cerevisiae). (974 aa)
nop53Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (473 aa)
ENSDARP00000148068RRM domain-containing protein. (134 aa)
ENSDARP00000148783Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (87 aa)
denrDensity-regulated protein; May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon. Involved in translation initiation; promotes recruitment of aminoacetyled initiator tRNA to P site of 40S ribosomes. Can promote release of deacylated tRNA and mRNA from recycled 40S subunits following ABCE1-mediated dissociation of post-termination ribosomal complexes into subunits (By similarity). (208 aa)
gemin2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (261 aa)
sf3a1Novel protein similar to human splicing factor 3a, subunit 1, 120kD (SF3A1). (780 aa)
ENSDARP00000151160Protein kinase domain-containing protein. (160 aa)
celf5bCugbp, Elav-like family member 5b. (410 aa)
ENSDARP00000153382Protein kinase domain-containing protein. (160 aa)
ENSDARP00000153439Uncharacterized protein. (161 aa)
puf60bPoly(U)-binding-splicing factor PUF60-B; DNA- and RNA-binding protein, involved in transcription repression and pre-mRNA splicing. (520 aa)
traf7TNF receptor-associated factor 7. (665 aa)
ENSDARP00000154119Uncharacterized protein. (192 aa)
LSM2Si:ch73-14h10.2. (95 aa)
rpf2Ribosome production factor 2 homolog. (308 aa)
abt1Activator of basal transcription 1. (305 aa)
ruvbl1RuvB-like 1; Has single-stranded DNA-stimulated ATPase and ATP-dependent DNA helicase (3' to 5') activity suggesting a role in nuclear processes such as recombination and transcription (By similarity). Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP- dependent nucleosome sliding (By similarity). May act as a negative regulator of embryonic heart growth. Belongs to the RuvB family. (456 aa)
eif6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (228 aa)
pih1d2PIH1 domain-containing protein 2; Belongs to the PIH1 family. (322 aa)
smn1Survival motor neuron protein 1; The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. It may also play a role in the metabolism of snoRNPs. Required in motor neurons and proprioceptive neurons to ensure correct U12 intron splicing and proper levels of tmem41b mRNA. Required for the maturation of motor neuron axonal branches and dendrites. (281 aa)
eif3iEukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (325 aa)
eif5Eukaryotic translation initiation factor 5. (429 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (239 aa)
eif3mEukaryotic translation initiation factor 3 subunit M; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (375 aa)
eif3gEukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (293 aa)
eif2s3Eukaryotic translation initiation factor 2 subunit 3; As a subunit of eukaryotic initiation factor 2 (eIF2), involved in the early steps of protein synthesis. In the presence of GTP, eIF2 forms a ternary complex with initiator tRNA Met-tRNAi and then recruits the 40S ribosomal complex, a step that determines the rate of protein translation. This step is followed by mRNA binding to form the 43S pre-initiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF2 and release of an eIF2-GDP binary complex. In o [...] (472 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
rps27.140S ribosomal protein S27. (84 aa)
znhit3Zinc finger, HIT-type-containing 3. (151 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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