(44 nodes) Cytosolic large ribosomal subunit network (Danio rerio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl4	Ribosomal protein L4. (375 aa)
	rpl30	Ribosomal protein L30. (117 aa)
	rpl37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	rpl18	Ribosomal protein L18. (182 aa)
	rpl7l1	Ribosomal protein L7-like 1. (247 aa)
	rpl34	60S ribosomal protein L34; Component of the large ribosomal subunit. (117 aa)
	rpl18a	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	rplp1	Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	rplp2l	Ribosomal protein, large P2,-like; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
	rpl7	Ribosomal protein L7. (246 aa)
	rpl27	60S ribosomal protein L27; Component of the large ribosomal subunit. (136 aa)
	rpl35	60S ribosomal protein L35; Plays an essential role in early embryonic development. May act as a haploinsufficient tumor suppressor. Belongs to the universal ribosomal protein uL29 family. (123 aa)
	rpl21	Ribosomal protein L21. (160 aa)
	rpl12	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	rpl23a	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (155 aa)
	rpl5a	Ribosomal protein L5a. (297 aa)
	rpl38	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	rpl3	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (403 aa)
	rpl23	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
	mrpl1	Mitochondrial ribosomal protein L1. (324 aa)
	rpl36a	60S ribosomal protein L36a. (106 aa)
	zcchc17	Zinc finger, CCHC domain-containing 17. (235 aa)
	rpl6	Ribosomal protein L6. (265 aa)
	rpl19	60S ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (196 aa)
	rpl5b	Ribosomal protein L5b. (296 aa)
	rpl8	60S ribosomal protein L8; Component of the large ribosomal subunit. (257 aa)
	aknad1	AKNA domain-containing 1. (207 aa)
	rpl17	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (184 aa)
	rpl10	60S ribosomal protein L10; Component of the large ribosomal subunit (Probable). Plays a role in the formation of actively translating ribosomes. Plays a role in the embryonic brain development. (215 aa)
	rpl26	ATPase H+ transporting V0 subunit e1. (145 aa)
	rpl13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
	rplp2	Ribosomal protein, large P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	rpl24	60S ribosomal protein L24; Plays an essential role in early embryonic development. Belongs to the eukaryotic ribosomal protein eL24 family. (157 aa)
	rpl14	Ribosomal protein L14. (139 aa)
	rpl36	60S ribosomal protein L36; Component of the large ribosomal subunit. (105 aa)
	rpl29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (64 aa)
	rpl28	Ribosomal protein L28. (151 aa)
	ENSDARP00000148783	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (87 aa)
	zgc:171772	Zgc:171772 protein. (92 aa)
	ENSDARP00000149739	Uncharacterized protein. (46 aa)
	ENSDARP00000155039	Uncharacterized protein. (62 aa)
	rplp0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10; Belongs to the universal ribosomal protein uL10 family. (316 aa)
	rpl10a	60S ribosomal protein L10a; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL1 family. (216 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSDARP00000148783	ENSDARP00000149739	ENSDARP00000148783	ENSDARP00000149739	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Uncharacterized protein.	0.923
ENSDARP00000148783	ENSDARP00000155039	ENSDARP00000148783	ENSDARP00000155039	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Uncharacterized protein.	0.945
ENSDARP00000148783	aknad1	ENSDARP00000148783	ENSDARP00000118865	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	AKNA domain-containing 1.	0.949
ENSDARP00000148783	mrpl1	ENSDARP00000148783	ENSDARP00000071305	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Mitochondrial ribosomal protein L1.	0.882
ENSDARP00000148783	rpl10	ENSDARP00000148783	ENSDARP00000120909	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L10; Component of the large ribosomal subunit (Probable). Plays a role in the formation of actively translating ribosomes. Plays a role in the embryonic brain development.	0.979
ENSDARP00000148783	rpl10a	ENSDARP00000148783	ENSDARP00000062982	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L10a; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL1 family.	0.941
ENSDARP00000148783	rpl12	ENSDARP00000148783	ENSDARP00000009096	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.980
ENSDARP00000148783	rpl13	ENSDARP00000148783	ENSDARP00000132139	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.976
ENSDARP00000148783	rpl14	ENSDARP00000148783	ENSDARP00000140879	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L14.	0.983
ENSDARP00000148783	rpl17	ENSDARP00000148783	ENSDARP00000119756	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.	0.980
ENSDARP00000148783	rpl18	ENSDARP00000148783	ENSDARP00000043172	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L18.	0.976
ENSDARP00000148783	rpl18a	ENSDARP00000148783	ENSDARP00000038658	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.978
ENSDARP00000148783	rpl19	ENSDARP00000148783	ENSDARP00000105649	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.983
ENSDARP00000148783	rpl21	ENSDARP00000148783	ENSDARP00000016158	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L21.	0.984
ENSDARP00000148783	rpl23	ENSDARP00000148783	ENSDARP00000069977	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.979
ENSDARP00000148783	rpl23a	ENSDARP00000148783	ENSDARP00000006624	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.984
ENSDARP00000148783	rpl24	ENSDARP00000148783	ENSDARP00000135555	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L24; Plays an essential role in early embryonic development. Belongs to the eukaryotic ribosomal protein eL24 family.	0.985
ENSDARP00000148783	rpl26	ENSDARP00000148783	ENSDARP00000130503	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	ATPase H+ transporting V0 subunit e1.	0.986
ENSDARP00000148783	rpl27	ENSDARP00000148783	ENSDARP00000018737	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L27; Component of the large ribosomal subunit.	0.985
ENSDARP00000148783	rpl28	ENSDARP00000148783	ENSDARP00000144405	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L28.	0.982

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