STRINGSTRING
B8JJU9_DANRE B8JJU9_DANRE irf1b irf1b cbfb cbfb rc3h1a rc3h1a tbx21 tbx21 mdkb mdkb fgl2a fgl2a mdka mdka socs1a socs1a E7FCG4_DANRE E7FCG4_DANRE rc3h2 rc3h2 loxl3b loxl3b hlx1 hlx1 tmem131l tmem131l rc3h1b rc3h1b F1QSM4_DANRE F1QSM4_DANRE zc3h12a zc3h12a loxl3a loxl3a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
B8JJU9_DANRESi:dkey-206d17.12. (626 aa)
irf1bInterferon regulatory factor. (287 aa)
cbfbCore-binding factor subunit beta. (201 aa)
rc3h1aRing finger and CCCH-type domains 1a. (1111 aa)
tbx21T-box transcription factor 21. (609 aa)
mdkbMidkine-related growth factor Mdk2. (147 aa)
fgl2aFibrinogen-like 2a. (451 aa)
mdkaMidkine-related growth factor Mdk1. (146 aa)
socs1aSuppressor of cytokine-signaling 1a. (201 aa)
E7FCG4_DANRESi:ch211-157b11.8. (392 aa)
rc3h2Ring finger and CCCH-type domains 2. (1028 aa)
loxl3bLysyl oxidase homolog 3B; Protein-lysine 6-oxidase that mediates the oxidation of peptidyl lysine residues to allysine in target proteins (By similarity). Catalyzes the post-translational oxidative deamination of peptidyl lysine residues in precursors of elastin and different types of collagens, a prerequisite in the formation of cross-links between collagens and elastin (By similarity). Can mediate oxidation of lysine residues that are acetylated (By similarity). Also able to catalyze deacetylation of lysine residues (By similarity). Required for maturation of neural crest derived car [...] (807 aa)
hlx1H2.0-like homeo box 1 (Drosophila). (356 aa)
tmem131lTransmembrane 131-like. (1545 aa)
rc3h1bRing finger and CCCH-type domains 1b. (1098 aa)
F1QSM4_DANRESi:ch211-203k16.3. (425 aa)
zc3h12aZinc finger CCCH-type-containing 12A. (367 aa)
loxl3aLysyl oxidase homolog 3A; Protein-lysine 6-oxidase that mediates the oxidation of peptidyl lysine residues to allysine in target proteins. Catalyzes the post-translational oxidative deamination of peptidyl lysine residues in precursors of elastin and different types of collagens, a prerequisite in the formation of cross-links between collagens and elastin. Can mediate oxidation of lysine residues that are acetylated. Also able to catalyze deacetylation of lysine residues (By similarity). (791 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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