STRINGSTRING
ptch1 ptch1 tmem79b tmem79b macroh2a2 macroh2a2 tmem79a tmem79a ENSDARP00000125042 ENSDARP00000125042 numa1 numa1 macroh2a1 macroh2a1 kdf1a kdf1a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ptch1Protein patched homolog 1. (1475 aa)
tmem79bTransmembrane protein 79b. (406 aa)
macroh2a2Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. (367 aa)
tmem79aTransmembrane protein 79a. (337 aa)
ENSDARP00000125042Patched 1. (120 aa)
numa1Wu:fb44b02. (2450 aa)
macroh2a1Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. (357 aa)
kdf1aKeratinocyte differentiation factor 1a. (383 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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