STRINGSTRING
timp2a timp2a nrd1b nrd1b timp2b timp2b snx9a snx9a il10 il10 tnfrsf1b tnfrsf1b sh3d19 sh3d19 nrd1a nrd1a Wu:fy63c09 Wu:fy63c09 il1b il1b timp4.1 timp4.1 timp4.3 timp4.3 tnfb tnfb snx9b snx9b
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
timp2aTissue inhibitor of metalloproteinase 2. (220 aa)
nrd1bNardilysin b (N-arginine dibasic convertase); Belongs to the peptidase M16 family. (1061 aa)
timp2bTIMP metallopeptidase inhibitor 2b. (265 aa)
snx9aSorting nexin. (562 aa)
il10Interleukin-10. (180 aa)
tnfrsf1bTumor necrosis factor receptor superfamily, member 1B. (425 aa)
sh3d19SH3 domain-containing 19. (958 aa)
nrd1aNardilysin a (N-arginine dibasic convertase); Belongs to the peptidase M16 family. (1091 aa)
Wu:fy63c09Uncharacterized protein. (698 aa)
il1bInterleukin-1. (284 aa)
timp4.1TIMP metallopeptidase inhibitor 4, tandem duplicate 1. (229 aa)
timp4.3TIMP metallopeptidase inhibitor 4, tandem duplicate 3. (198 aa)
tnfbTumor necrosis factor b (TNF superfamily, member 2). (242 aa)
snx9bSorting nexin. (581 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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