STRINGSTRING
tgfb1b tgfb1b ep300b ep300b tgfb1a tgfb1a rb1 rb1 igf2a igf2a ep300a ep300a gtf2b gtf2b
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tgfb1bTransforming growth factor beta; Belongs to the TGF-beta family. (379 aa)
ep300bE1A-binding protein p300 b. (2615 aa)
tgfb1aTransforming growth factor beta; Belongs to the TGF-beta family. (377 aa)
rb1Retinoblastoma 1. (903 aa)
igf2aInsulin-like growth factor 2a. (197 aa)
ep300aE1A-binding protein p300 a. (2679 aa)
gtf2bGeneral transcription factor IIB. (316 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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