35 items (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	X1WBC3_DANRE	Si:ch211-176g13.8. (732 aa)
	myo1cb	Myosin Ic, paralog b; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1028 aa)
	gsdmea	Gasdermin Ea. (521 aa)
	PKHD1L1	Si:ch211-244a23.1. (4198 aa)
	pjvk	Pejvakin. (361 aa)
	espn	Espin. (873 aa)
	loxhd1a	Lipoxygenase homology domains 1a. (2122 aa)
	espnlb	Espin-like b. (1004 aa)
	loxhd1b	Lipoxygenase homology domains 1b. (2215 aa)
	whrnb	Whirlin b. (946 aa)
	ripor3	RIPOR family member 3; Belongs to the RIPOR family. (997 aa)
	myo3a	Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1775 aa)
	pkhd1l1	Polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1. (4208 aa)
	cib3	Calcium and integrin-binding family member 3. (180 aa)
	tspearb	Thrombospondin-type laminin G domain and EAR repeats b. (666 aa)
	ush1c	Usher syndrome 1C (Autosomal recessive, severe). (548 aa)
	whrna	Whirlin a. (939 aa)
	morn4	MORN repeat-containing 4. (146 aa)
	tspeara	Thrombospondin-type laminin G domain and EAR repeats a. (676 aa)
	ripor1	RHO family-interacting cell polarization regulator 1. (1082 aa)
	ripor2	Rho family-interacting cell polarization regulator 2; Acts as an inhibitor of the small GTPase RHOA and plays several roles in the regulation of myoblast and hair cell differentiation, lymphocyte T proliferation and neutrophil polarization (By similarity). Plays a role in fetal mononuclear myoblast differentiation by promoting filopodia and myotube formation. Maintains naive T lymphocytes in a quiescent state and prevents chemokine-induced T lymphocyte responses, such as cell adhesion, polarization and migration. Involved also in the regulation of neutrophil polarization, chemotaxis an [...] (1083 aa)
	myo1ca	Unconventional myosin-Ic; Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments (By similarity). (1045 aa)
	tmc2b	Transmembrane channel-like protein 2-B; Belongs to the TMC family. (892 aa)
	adgrv1	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system. (6198 aa)
	myo3b	Myosin IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1272 aa)
	ENSDARP00000156184	Uncharacterized protein. (104 aa)
	strc1	Stereocilin 1. (2032 aa)
	LOC100536453	F-BAR domain-containing protein. (148 aa)
	LOC100004499	Stereocilin. (1934 aa)
	pdzd7a	PDZ domain-containing 7a. (954 aa)
	tprn	Taperin. (758 aa)
	mpp1	Membrane protein, palmitoylated 1; Belongs to the MAGUK family. (468 aa)
	cib2	Calcium and integrin-binding family member 2. (187 aa)
	espnla	Espin-like a. (925 aa)
	si:dkey-7i4.24	Si:dkey-7i4.24. (412 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSDARP00000156184	pdzd7a	ENSDARP00000156184	ENSDARP00000139792	Uncharacterized protein.	PDZ domain-containing 7a.	0.510
LOC100004499	adgrv1	ENSDARP00000142292	ENSDARP00000020853	Stereocilin.	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	0.628
LOC100004499	cib2	ENSDARP00000142292	ENSDARP00000130315	Stereocilin.	Calcium and integrin-binding family member 2.	0.591
LOC100004499	espn	ENSDARP00000142292	ENSDARP00000123042	Stereocilin.	Espin.	0.576
LOC100004499	loxhd1a	ENSDARP00000142292	ENSDARP00000122460	Stereocilin.	Lipoxygenase homology domains 1a.	0.419
LOC100004499	myo3a	ENSDARP00000142292	ENSDARP00000113364	Stereocilin.	Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.560
LOC100004499	pdzd7a	ENSDARP00000142292	ENSDARP00000139792	Stereocilin.	PDZ domain-containing 7a.	0.612
LOC100004499	ush1c	ENSDARP00000142292	ENSDARP00000104974	Stereocilin.	Usher syndrome 1C (Autosomal recessive, severe).	0.674
LOC100004499	whrna	ENSDARP00000142292	ENSDARP00000102025	Stereocilin.	Whirlin a.	0.705
LOC100004499	whrnb	ENSDARP00000142292	ENSDARP00000119523	Stereocilin.	Whirlin b.	0.732
LOC100536453	pdzd7a	ENSDARP00000148774	ENSDARP00000139792	F-BAR domain-containing protein.	PDZ domain-containing 7a.	0.510
X1WBC3_DANRE	pdzd7a	ENSDARP00000127514	ENSDARP00000139792	Si:ch211-176g13.8.	PDZ domain-containing 7a.	0.510
adgrv1	LOC100004499	ENSDARP00000020853	ENSDARP00000142292	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Stereocilin.	0.628
adgrv1	cib2	ENSDARP00000020853	ENSDARP00000130315	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Calcium and integrin-binding family member 2.	0.864
adgrv1	espn	ENSDARP00000020853	ENSDARP00000123042	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Espin.	0.603
adgrv1	loxhd1a	ENSDARP00000020853	ENSDARP00000122460	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Lipoxygenase homology domains 1a.	0.551
adgrv1	loxhd1b	ENSDARP00000020853	ENSDARP00000119539	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Lipoxygenase homology domains 1b.	0.504
adgrv1	pdzd7a	ENSDARP00000020853	ENSDARP00000139792	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	PDZ domain-containing 7a.	0.988
adgrv1	strc1	ENSDARP00000020853	ENSDARP00000151799	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Stereocilin 1.	0.531
adgrv1	ush1c	ENSDARP00000020853	ENSDARP00000104974	Adhesion G-protein coupled receptor V1; Receptor that may have an important role in the development of the sensory nervous system.	Usher syndrome 1C (Autosomal recessive, severe).	0.971

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