STRINGSTRING
E7EXX6_DANRE E7EXX6_DANRE senp7b senp7b ush2a ush2a Q1LYI5_DANRE Q1LYI5_DANRE otol1b otol1b E7F2X8_DANRE E7F2X8_DANRE cmn cmn col4a1 col4a1 kazald3 kazald3 fbn2a fbn2a c1ql4b c1ql4b lamb1b lamb1b matn4 matn4 rbp4l rbp4l loxl2a loxl2a rell2 rell2 nitr7b nitr7b lamb4 lamb4 fbln5 fbln5 zgc:171687 zgc:171687 cbln14 cbln14 lgals3bpa lgals3bpa cbln9 cbln9 col11a1b col11a1b matn1 matn1 lamb2l lamb2l lama5 lama5 c1ql3b c1ql3b sparc sparc cbln10 cbln10 ENSDARP00000147992 ENSDARP00000147992 vcana vcana loxl2b loxl2b ENSDARP00000145842 ENSDARP00000145842 ENSDARP00000145314 ENSDARP00000145314 LOC100334800 LOC100334800 eys-2 eys-2 LOC559501 LOC559501 ptprz1b ptprz1b ENSDARP00000142600 ENSDARP00000142600 ENSDARP00000142200 ENSDARP00000142200 LOC570739 LOC570739 hspg2 hspg2 postnb postnb caskb caskb col28a2b col28a2b nid1b nid1b agrn agrn impg2b-2 impg2b-2 nitr7a nitr7a bcan bcan frem1b frem1b col7a1l col7a1l emilin2b emilin2b col2a1b col2a1b fras1 fras1 Ncana Ncana col9a2 col9a2 ccn1 ccn1 col21a1 col21a1 col5a2b col5a2b col24a1 col24a1 scara3 scara3 dcn dcn tgfb3 tgfb3 lamc1 lamc1 acana acana c1ql3a c1ql3a postna postna col14a1a col14a1a tnr tnr col12a1b col12a1b lama4 lama4 vcanb vcanb col1a1a col1a1a col1a1b col1a1b col11a1a col11a1a coch coch ccdc80 ccdc80 impg1b impg1b sparcl2 sparcl2 X1WCX6_DANRE X1WCX6_DANRE X1WB94_DANRE X1WB94_DANRE chadlb chadlb vwa2 vwa2 irbpl irbpl LOC100007488 LOC100007488 zgc:173915-2 zgc:173915-2 col14a1b col14a1b ENSDARP00000136675 ENSDARP00000136675 col4a2 col4a2 chadla chadla col12a1a col12a1a ptprz1a ptprz1a nid2a nid2a col7a1 col7a1 lama1 lama1 col10a1b col10a1b col28a1b col28a1b LOC101886098 LOC101886098 lamb1a lamb1a lama2 lama2 ntn4 ntn4 impg2b impg2b nitr11a nitr11a ntng1a ntng1a ENSDARP00000155312 ENSDARP00000155312 timp4.3 timp4.3 LOC566119 LOC566119 ENSDARP00000151615 ENSDARP00000151615 lama3 lama3 c1qtnf2 c1qtnf2 LOC100535278 LOC100535278 LOC101886266 LOC101886266 R4GES4_DANRE R4GES4_DANRE R4GEQ7_DANRE R4GEQ7_DANRE R4GEG2_DANRE R4GEG2_DANRE LOC108179162 LOC108179162 col16a1 col16a1 c1ql1 c1ql1 col11a2 col11a2 matn3a matn3a acanb acanb zpld1a zpld1a MFAP4 MFAP4 rnasel3 rnasel3 col24a1-2 col24a1-2 Q1LYN9_DANRE Q1LYN9_DANRE col6a3 col6a3 si:dkey-32e6.6 si:dkey-32e6.6 lamb2 lamb2 c1ql4a c1ql4a impg1a impg1a F1QGA7_DANRE F1QGA7_DANRE matn3b matn3b LOC108191316 LOC108191316 col5a2a col5a2a c1ql2 c1ql2 col5a1 col5a1 nid2b nid2b F1R9B8_DANRE F1R9B8_DANRE pvalb6 pvalb6 lum lum col19a1-2 col19a1-2 F1R5U5_DANRE F1R5U5_DANRE mmrn2a mmrn2a impg2a impg2a zgc:158412 zgc:158412 VIT VIT rbp3 rbp3 kazald2 kazald2 col1a2 col1a2 adamts6 adamts6 si:dkey-61l1.4 si:dkey-61l1.4 lamc3 lamc3 ecm2 ecm2 otol1a otol1a zmp:0000001323 zmp:0000001323 tnc tnc E9QC51_DANRE E9QC51_DANRE col8a2 col8a2 hapln4 hapln4 F1REG9_DANRE F1REG9_DANRE fn1a fn1a smoc1 smoc1 E7F5H0_DANRE E7F5H0_DANRE c1qtnf9 c1qtnf9 smoc2 smoc2 emilin1a emilin1a col4a6 col4a6 c1qtnf7 c1qtnf7 col6a4a col6a4a col28a1a col28a1a zgc:112492 zgc:112492 mmrn2b mmrn2b paqr4b paqr4b col28a2a col28a2a vwa1 vwa1 adamts10 adamts10 col19a1 col19a1 paqr4a paqr4a zmp:0000000846 zmp:0000000846 emilin1b emilin1b fn1b fn1b zmp:0000000760 zmp:0000000760 thbs4b thbs4b lgals3bpb lgals3bpb Q1LYP0_DANRE Q1LYP0_DANRE caska caska col2a1a col2a1a mfap4 mfap4 zgc:173915 zgc:173915 nid1a nid1a lamc2 lamc2 A2CEV2_DANRE A2CEV2_DANRE zpld1b zpld1b si:dkey-6n6.1 si:dkey-6n6.1 frem1a frem1a F1Q9H5_DANRE F1Q9H5_DANRE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
E7EXX6_DANRESi:dkey-202e22.2. (642 aa)
senp7bSUMO-specific peptidase 7b. (879 aa)
ush2aUsher syndrome 2A (autosomal recessive, mild). (5236 aa)
Q1LYI5_DANRESi:ch211-106n13.3. (873 aa)
otol1bOtolin 1b. (494 aa)
E7F2X8_DANRESi:ch211-213d14.1. (282 aa)
cmnCalymmin. (1207 aa)
col4a1Collagen, type IV, alpha 1. (1583 aa)
kazald3Kazal-type serine peptidase inhibitor domain 3. (296 aa)
fbn2aFibrillin 2a. (2760 aa)
c1ql4bComplement component 1, q subcomponent-like 4b. (240 aa)
lamb1bLaminin, beta 1b. (1767 aa)
matn4Matrilin-4. (944 aa)
rbp4lRetinol-binding protein 4,-like; Belongs to the calycin superfamily. Lipocalin family. (196 aa)
loxl2aLysyl oxidase homolog 2A; Mediates the post-translational oxidative deamination of lysine residues on target proteins leading to the formation of deaminated lysine (allysine) (By similarity). Acts as a transcription corepressor and specifically mediates deamination of trimethylated 'Lys-4' of histone H3 (H3K4me3), a specific tag for epigenetic transcriptional activation (By similarity). Shows no activity against histone H3 when it is trimethylated on 'Lys-9' (H3K9me3) or 'Lys-27' (H3K27me3) or when 'Lys-4' is monomethylated (H3K4me1) or dimethylated (H3K4me2) (By similarity). Also medi [...] (737 aa)
rell2RELT-like 2. (401 aa)
nitr7bNovel immune-type receptor 7b, allele 2. (243 aa)
lamb4Laminin subunit beta-4; Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. (1827 aa)
fbln5Fibulin 5. (477 aa)
zgc:171687Zgc:171687. (241 aa)
cbln14Cerebellin 14. (225 aa)
lgals3bpaGalectin-3-binding protein A; Promotes integrin-mediated cell adhesion. (567 aa)
cbln9Cerebellin 9. (183 aa)
col11a1bCollagen, type XI, alpha 1b. (1815 aa)
matn1Matrilin 1. (489 aa)
lamb2lLaminin, beta 2-like. (1836 aa)
lama5Laminin, alpha 5. (3664 aa)
c1ql3bComplement component 1, q subcomponent-like 3b. (246 aa)
sparcSecreted protein, acidic, cysteine-rich (osteonectin). (291 aa)
cbln10Cerebellin 10. (231 aa)
ENSDARP00000147992Fibrinogen C-terminal domain-containing protein. (150 aa)
vcanaVersican a. (635 aa)
loxl2bLysyl oxidase homolog 2B; Mediates the post-translational oxidative deamination of lysine residues on target proteins leading to the formation of deaminated lysine (allysine) (By similarity). Acts as a transcription corepressor and specifically mediates deamination of trimethylated 'Lys-4' of histone H3 (H3K4me3), a specific tag for epigenetic transcriptional activation (By similarity). Shows no activity against histone H3 when it is trimethylated on 'Lys-9' (H3K9me3) or 'Lys-27' (H3K27me3) or when 'Lys-4' is monomethylated (H3K4me1) or dimethylated (H3K4me2) (By similarity). Also medi [...] (762 aa)
ENSDARP00000145842Uncharacterized protein. (313 aa)
ENSDARP00000145314Uncharacterized protein. (901 aa)
LOC100334800Fibrinogen C-terminal domain-containing protein. (246 aa)
eys-2Protein eyes shut homolog; Required to maintain the integrity of photoreceptor cells. Specifically required for normal morphology of the photoreceptor ciliary pocket, and might thus facilitate protein trafficking between the photoreceptor inner and outer segments via the transition zone. Belongs to the EYS family. (296 aa)
LOC559501Vav 3 guanine nucleotide exchange factor b. (471 aa)
ptprz1bProtein tyrosine phosphatase receptor type Z1b. (1303 aa)
ENSDARP00000142600Si:dkey-23a13.11. (1198 aa)
ENSDARP00000142200Si:dkey-23a13.2. (352 aa)
LOC570739Si:ch73-368j24.17. (923 aa)
hspg2Heparan sulfate proteoglycan 2. (3462 aa)
postnbPeriostin, osteoblast-specific factor b. (782 aa)
caskbCalcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family. (484 aa)
col28a2bCollagen, type XXVIII, alpha 2b. (1142 aa)
nid1bNidogen 1b. (1242 aa)
agrnAgrin. (1926 aa)
impg2b-2Interphotoreceptor matrix proteoglycan 2b. (428 aa)
nitr7aNovel immune-type receptor 7a, allele 2. (194 aa)
bcanBrevican. (1295 aa)
frem1bFras1-related extracellular matrix 1b. (2166 aa)
col7a1lCollagen type VII alpha 1-like. (2302 aa)
emilin2bElastin microfibril interfacer 2b. (805 aa)
col2a1bCollagen, type II, alpha 1b. (1344 aa)
fras1Fraser extracellular matrix complex subunit 1. (4003 aa)
NcanaUncharacterized protein. (649 aa)
col9a2Procollagen, type IX, alpha 2. (691 aa)
ccn1Cellular communication network factor 1. (369 aa)
col21a1Collagen, type XXI, alpha 1. (717 aa)
col5a2bCollagen, type V, alpha 2b. (1499 aa)
col24a1LAM_G_DOMAIN domain-containing protein. (740 aa)
scara3Scavenger receptor class A, member 3. (586 aa)
dcnDecorin; May affect the rate of fibrils formation. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily. (373 aa)
tgfb3Transforming growth factor beta; Belongs to the TGF-beta family. (410 aa)
lamc1Laminin subunit gamma-1; Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. (1593 aa)
acanaAggrecan a. (1547 aa)
c1ql3aComplement component 1, q subcomponent-like 3a. (267 aa)
postnaPeriostin, osteoblast-specific factor a. (882 aa)
col14a1aCollagen, type XIV, alpha 1a. (1864 aa)
tnrTenascin R (Restrictin, janusin). (1350 aa)
col12a1bCollagen, type XII, alpha 1b. (3643 aa)
lama4Laminin, alpha 4. (1871 aa)
vcanbVersican b. (1569 aa)
col1a1aCollagen, type I, alpha 1a. (1447 aa)
col1a1bCollagen, type I, alpha 1b. (1449 aa)
col11a1aCollagen, type XI, alpha 1a. (1813 aa)
cochCoagulation factor C homolog, cochlin (Limulus polyphemus). (553 aa)
ccdc80Coiled-coil domain-containing protein 80; Promotes cell adhesion and matrix assembly; Belongs to the CCDC80 family. (867 aa)
impg1bInterphotoreceptor matrix proteoglycan 1b. (936 aa)
sparcl2SPARC-like 2. (259 aa)
X1WCX6_DANRESi:ch211-196i2.1. (1573 aa)
X1WB94_DANRESi:ch1073-110a20.7. (101 aa)
chadlbChondroadherin-like b. (765 aa)
vwa2Von Willebrand factor A domain-containing 2. (795 aa)
irbplInterphotoreceptor retinoid-binding protein-like. (912 aa)
LOC100007488Si:ch1073-110a20.7. (245 aa)
zgc:173915-2Zgc:173915. (240 aa)
col14a1bCollagen, type XIV, alpha 1b. (776 aa)
ENSDARP00000136675Si:dkeyp-44a8.4. (449 aa)
col4a2Collagen, type IV, alpha 2. (1669 aa)
chadlaChondroadherin-like a. (791 aa)
col12a1aCollagen, type XII, alpha 1a. (2975 aa)
ptprz1aProtein tyrosine phosphatase receptor type Z1a. (1837 aa)
nid2aNidogen 2a (osteonidogen). (1576 aa)
col7a1Collagen, type VII, alpha 1. (3093 aa)
lama1Laminin, alpha 1. (3075 aa)
col10a1bCollagen, type X, alpha 1b. (659 aa)
col28a1bCollagen, type XXVIII, alpha 1b. (1109 aa)
LOC101886098Uncharacterized protein. (483 aa)
lamb1aLaminin, beta 1a. (1785 aa)
lama2Laminin, alpha 2. (845 aa)
ntn4Netrin 4. (639 aa)
impg2bInterphotoreceptor matrix proteoglycan 2b. (353 aa)
nitr11aIGv domain-containing protein. (194 aa)
ntng1aNetrin g1a. (546 aa)
ENSDARP00000155312Uncharacterized protein. (645 aa)
timp4.3TIMP metallopeptidase inhibitor 4, tandem duplicate 3. (198 aa)
LOC566119Fibrinogen C-terminal domain-containing protein. (245 aa)
ENSDARP00000151615Uncharacterized protein. (107 aa)
lama3Laminin, alpha 3. (1711 aa)
c1qtnf2C1q and TNF-related 2. (292 aa)
LOC100535278Si:ch211-62a1.3. (1771 aa)
LOC101886266Si:ch211-160j14.3. (416 aa)
R4GES4_DANRESi:ch1073-110a20.2. (243 aa)
R4GEQ7_DANRESi:zfos-2330d3.7. (243 aa)
R4GEG2_DANRESi:ch1073-110a20.3. (245 aa)
LOC108179162Si:zfos-2330d3.7. (248 aa)
col16a1Collagen, type XVI, alpha 1. (1580 aa)
c1ql1Complement component 1, q subcomponent-like 3b. (298 aa)
col11a2Collagen, type XI, alpha 2. (1803 aa)
matn3aNovel protein similar to vertebrate matrilin 3 (MATN3) (Zgc:101120). (337 aa)
acanbAggrecan b. (1373 aa)
zpld1aZona pellucida-like domain-containing 1a. (440 aa)
MFAP4Wu:fj11g02. (246 aa)
rnasel3Ribonuclease-like 3; Ribonuclease. Angiogenic. Plays a role in host defense. Exhibits strong antibacterial activity against Gram-negative bacteria but mild antibacterial activity against Gram-positive bacteria. The RNase activity is not required for the bactericidal activity. Belongs to the pancreatic ribonuclease family. (149 aa)
col24a1-2Collagen type XXIV alpha 1. (201 aa)
Q1LYN9_DANRESi:dkey-117n7.4. (531 aa)
col6a3Collagen, type VI, alpha 3. (3733 aa)
si:dkey-32e6.6Si:dkey-32e6.6. (523 aa)
lamb2Laminin, beta 2 (laminin S). (1782 aa)
c1ql4aComplement component 1, q subcomponent-like 4. (237 aa)
impg1aInterphotoreceptor matrix proteoglycan 1a. (251 aa)
F1QGA7_DANRESi:ch1073-15f12.3. (306 aa)
matn3bMatrilin-3b. (478 aa)
LOC108191316Collagen, type VI, alpha 3. (824 aa)
col5a2aCollagen, type V, alpha 2a. (1521 aa)
c1ql2Complement component 1, q subcomponent-like 2. (248 aa)
col5a1Procollagen, type V, alpha 1. (2011 aa)
nid2bNidogen 2b (osteonidogen). (1155 aa)
F1R9B8_DANRESi:ch211-241e1.3. (1347 aa)
pvalb6Parvalbumin isoform 4b; Belongs to the parvalbumin family. (109 aa)
lumLumican. (372 aa)
col19a1-2Collagen, type XIX, alpha 1. (617 aa)
F1R5U5_DANRESi:ch211-165f21.7. (805 aa)
mmrn2aMultimerin 2a. (1087 aa)
impg2aInterphotoreceptor matrix proteoglycan 2a. (270 aa)
zgc:158412Uncharacterized protein C11orf53 homolog. (193 aa)
VITVitrin. (762 aa)
rbp3Retinol-binding protein 3. (615 aa)
kazald2Kazal-type serine peptidase inhibitor domain 2. (303 aa)
col1a2Collagen, type I, alpha 2. (1352 aa)
adamts6ADAM metallopeptidase with thrombospondin type 1 motif, 6. (1116 aa)
si:dkey-61l1.4Si:dkey-61l1.4. (1194 aa)
lamc3Laminin, gamma 3. (1643 aa)
ecm2Extracellular matrix protein 2, female organ and adipocyte-specific. (731 aa)
otol1aOtolin-1-A; Collagen-like protein, which provides an organic scaffold for otoliths onto the sensory epithelium of the inner ear. Acts as a scaffold for biomineralization by sequestering calcium ; Belongs to the OTOL1 family. (489 aa)
zmp:0000001323Zmp:0000001323. (242 aa)
tncTenascin C. (1811 aa)
E9QC51_DANRESi:ch1073-110a20.1. (244 aa)
col8a2Collagen, type VIII, alpha 2. (686 aa)
hapln4Hyaluronan and proteoglycan link protein 4. (344 aa)
F1REG9_DANRESi:ch211-158d24.2. (605 aa)
fn1aFibronectin 1a. (2480 aa)
smoc1SPARC-related modular calcium-binding 1. (461 aa)
E7F5H0_DANRESi:dkey-163f14.6. (740 aa)
c1qtnf9C1q and TNF-related 9. (339 aa)
smoc2SPARC-related modular calcium-binding 2. (437 aa)
emilin1aElastin microfibril interfacer 1a. (1014 aa)
col4a6Collagen, type IV, alpha 6. (1714 aa)
c1qtnf7C1q and TNF-related 7. (286 aa)
col6a4aCollagen, type VI, alpha 4a. (2543 aa)
col28a1aCollagen, type XXVIII, alpha 1a. (1170 aa)
zgc:112492Zgc:112492. (561 aa)
mmrn2bMultimerin 2b. (641 aa)
paqr4bProgestin and adipoQ receptor family member IVb. (278 aa)
col28a2aCollagen, type XXVIII, alpha 2a. (1208 aa)
vwa1Von Willebrand factor A domain-containing 1. (503 aa)
adamts10ADAM metallopeptidase with thrombospondin type 1 motif, 10. (1108 aa)
col19a1Collagen, type XIX, alpha 1. (303 aa)
paqr4aProgestin and adipoQ receptor family member IVa. (272 aa)
zmp:0000000846Zmp:0000000846. (1532 aa)
emilin1bElastin microfibril interfacer 1b. (1059 aa)
fn1bFibronectin 1b. (2500 aa)
zmp:0000000760Zmp:0000000760. (780 aa)
thbs4bThrombospondin-4-B; Adhesive glycoprotein that mediates cell-to-cell and cell-to- matrix interactions and may be involved in various processes including cellular proliferation, migration, adhesion and attachment. May play a role in ER stress response (By similarity); Belongs to the thrombospondin family. (949 aa)
lgals3bpbGalectin-3-binding protein B; Promotes integrin-mediated cell adhesion. (572 aa)
Q1LYP0_DANRESi:dkey-117n7.5. (172 aa)
caskaCalcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family. (920 aa)
col2a1aCollagen, type II, alpha 1a. (1491 aa)
mfap4Microfibril-associated protein 4. (242 aa)
zgc:173915Zgc:173915. (242 aa)
nid1aNidogen 1a. (1175 aa)
lamc2Laminin, gamma 2. (736 aa)
A2CEV2_DANRESi:dkey-220k22.1. (574 aa)
zpld1bZona pellucida-like domain-containing 1b. (412 aa)
si:dkey-6n6.1Si:dkey-6n6.1. (680 aa)
frem1aFras1-related extracellular matrix 1a. (2167 aa)
F1Q9H5_DANRESi:dkey-100n23.3. (991 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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