21 items (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	X1WGB6_DANRE	Si:ch211-37e10.2. (926 aa)
	nradd	Neurotrophin receptor-associated death domain. (413 aa)
	hdr	Hematopoietic death receptor. (418 aa)
	cd27	CD27 molecule. (248 aa)
	tnfrsf19	Tumor necrosis factor receptor superfamily, member 19. (356 aa)
	fas	Fas cell surface death receptor. (293 aa)
	tnfrsf9b	Tumor necrosis factor receptor superfamily, member 9b. (281 aa)
	tnfrsf1b	Tumor necrosis factor receptor superfamily, member 1B. (425 aa)
	si:dkey-21a6.5	Si:dkey-21a6.5. (338 aa)
	tnfrsf11a	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator. (574 aa)
	E7F5J4_DANRE	Si:ch73-361p23.3. (272 aa)
	tnfrsf18	Tumor necrosis factor receptor superfamily, member 18. (261 aa)
	E7FDJ7_DANRE	Si:ch211-112c15.8. (373 aa)
	igflr1	IGF-like family receptor 1. (338 aa)
	ngfra	Nerve growth factor receptor a (TNFR superfamily, member 16). (346 aa)
	cd40	CD40 molecule, TNF receptor superfamily member 5. (286 aa)
	E9QE65_DANRE	Si:dkey-260g12.1. (336 aa)
	zgc:153759	Zgc:153759. (266 aa)
	tnfrsf9a	Tumor necrosis factor receptor superfamily, member 9a. (285 aa)
	ngfrb	Nerve growth factor receptor b. (431 aa)
	X1WBF6_DANRE	Si:ch211-252f13.5. (876 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
X1WBF6_DANRE	si:dkey-21a6.5	ENSDARP00000127547	ENSDARP00000106974	Si:ch211-252f13.5.	Si:dkey-21a6.5.	0.456
cd27	cd40	ENSDARP00000142131	ENSDARP00000114636	CD27 molecule.	CD40 molecule, TNF receptor superfamily member 5.	0.645
cd27	fas	ENSDARP00000142131	ENSDARP00000074016	CD27 molecule.	Fas cell surface death receptor.	0.449
cd27	tnfrsf18	ENSDARP00000142131	ENSDARP00000108376	CD27 molecule.	Tumor necrosis factor receptor superfamily, member 18.	0.752
cd27	tnfrsf9a	ENSDARP00000142131	ENSDARP00000124913	CD27 molecule.	Tumor necrosis factor receptor superfamily, member 9a.	0.441
cd27	tnfrsf9b	ENSDARP00000142131	ENSDARP00000136990	CD27 molecule.	Tumor necrosis factor receptor superfamily, member 9b.	0.503
cd40	cd27	ENSDARP00000114636	ENSDARP00000142131	CD40 molecule, TNF receptor superfamily member 5.	CD27 molecule.	0.645
cd40	tnfrsf11a	ENSDARP00000114636	ENSDARP00000107161	CD40 molecule, TNF receptor superfamily member 5.	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.	0.533
cd40	tnfrsf18	ENSDARP00000114636	ENSDARP00000108376	CD40 molecule, TNF receptor superfamily member 5.	Tumor necrosis factor receptor superfamily, member 18.	0.451
fas	cd27	ENSDARP00000074016	ENSDARP00000142131	Fas cell surface death receptor.	CD27 molecule.	0.449
fas	hdr	ENSDARP00000074016	ENSDARP00000012354	Fas cell surface death receptor.	Hematopoietic death receptor.	0.665
hdr	fas	ENSDARP00000012354	ENSDARP00000074016	Hematopoietic death receptor.	Fas cell surface death receptor.	0.665
igflr1	tnfrsf18	ENSDARP00000111941	ENSDARP00000108376	IGF-like family receptor 1.	Tumor necrosis factor receptor superfamily, member 18.	0.405
ngfra	ngfrb	ENSDARP00000112207	ENSDARP00000126756	Nerve growth factor receptor a (TNFR superfamily, member 16).	Nerve growth factor receptor b.	0.906
ngfra	nradd	ENSDARP00000112207	ENSDARP00000002813	Nerve growth factor receptor a (TNFR superfamily, member 16).	Neurotrophin receptor-associated death domain.	0.914
ngfrb	ngfra	ENSDARP00000126756	ENSDARP00000112207	Nerve growth factor receptor b.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.906
ngfrb	nradd	ENSDARP00000126756	ENSDARP00000002813	Nerve growth factor receptor b.	Neurotrophin receptor-associated death domain.	0.913
ngfrb	tnfrsf19	ENSDARP00000126756	ENSDARP00000061350	Nerve growth factor receptor b.	Tumor necrosis factor receptor superfamily, member 19.	0.582
nradd	ngfra	ENSDARP00000002813	ENSDARP00000112207	Neurotrophin receptor-associated death domain.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.914
nradd	ngfrb	ENSDARP00000002813	ENSDARP00000126756	Neurotrophin receptor-associated death domain.	Nerve growth factor receptor b.	0.913

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