(13 nodes) Ribosomal protein L7Ae/L30e/S12e/Gadd45 network (Danio rerio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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co-expression

protein homology

Your Input:
	rpl7a	Ribosomal protein L7a. (266 aa)
	gadd45ba	Growth arrest and DNA-damage-inducible, beta a. (159 aa)
	snu13b	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	rpl30	Ribosomal protein L30. (117 aa)
	rps12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (132 aa)
	rpp38	Ribonuclease P/MRP 38 subunit. (265 aa)
	gadd45aa	Growth arrest and DNA-damage-inducible, alpha, a. (157 aa)
	snu13a	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	nhp2	H/ACA ribonucleoprotein complex subunit 2-like protein; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity). (150 aa)
	gadd45ab	Growth arrest and DNA-damage-inducible, alpha, b. (156 aa)
	gadd45bb	Growth arrest and DNA-damage-inducible, beta like. (158 aa)
	gadd45gb.1	Growth arrest and DNA-damage-inducible, gamma b, tandem duplicate 1. (155 aa)
	gadd45ga	Growth arrest and DNA-damage-inducible, gamma a. (159 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
nhp2	rpl30	ENSDARP00000091811	ENSDARP00000052081	H/ACA ribonucleoprotein complex subunit 2-like protein; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity).	Ribosomal protein L30.	0.877
nhp2	rpp38	ENSDARP00000091811	ENSDARP00000059052	H/ACA ribonucleoprotein complex subunit 2-like protein; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity).	Ribonuclease P/MRP 38 subunit.	0.902
nhp2	snu13a	ENSDARP00000091811	ENSDARP00000087463	H/ACA ribonucleoprotein complex subunit 2-like protein; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity).	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.947
nhp2	snu13b	ENSDARP00000091811	ENSDARP00000038446	H/ACA ribonucleoprotein complex subunit 2-like protein; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity).	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.961
rpl30	nhp2	ENSDARP00000052081	ENSDARP00000091811	Ribosomal protein L30.	H/ACA ribonucleoprotein complex subunit 2-like protein; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity).	0.877
rpl30	rpl7a	ENSDARP00000052081	ENSDARP00000010055	Ribosomal protein L30.	Ribosomal protein L7a.	0.999
rpl30	rpp38	ENSDARP00000052081	ENSDARP00000059052	Ribosomal protein L30.	Ribonuclease P/MRP 38 subunit.	0.877
rpl30	rps12	ENSDARP00000052081	ENSDARP00000053541	Ribosomal protein L30.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
rpl30	snu13a	ENSDARP00000052081	ENSDARP00000087463	Ribosomal protein L30.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.878
rpl30	snu13b	ENSDARP00000052081	ENSDARP00000038446	Ribosomal protein L30.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.877
rpl7a	rpl30	ENSDARP00000010055	ENSDARP00000052081	Ribosomal protein L7a.	Ribosomal protein L30.	0.999
rpl7a	rps12	ENSDARP00000010055	ENSDARP00000053541	Ribosomal protein L7a.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
rpp38	nhp2	ENSDARP00000059052	ENSDARP00000091811	Ribonuclease P/MRP 38 subunit.	H/ACA ribonucleoprotein complex subunit 2-like protein; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs (By similarity).	0.902
rpp38	rpl30	ENSDARP00000059052	ENSDARP00000052081	Ribonuclease P/MRP 38 subunit.	Ribosomal protein L30.	0.877
rpp38	rps12	ENSDARP00000059052	ENSDARP00000053541	Ribonuclease P/MRP 38 subunit.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.642
rps12	rpl30	ENSDARP00000053541	ENSDARP00000052081	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	Ribosomal protein L30.	0.999
rps12	rpl7a	ENSDARP00000053541	ENSDARP00000010055	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	Ribosomal protein L7a.	0.999
rps12	rpp38	ENSDARP00000053541	ENSDARP00000059052	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	Ribonuclease P/MRP 38 subunit.	0.642
rps12	snu13a	ENSDARP00000053541	ENSDARP00000087463	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.859
rps12	snu13b	ENSDARP00000053541	ENSDARP00000038446	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.869

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