STRINGSTRING
col28a2a col28a2a zmp:0000000760 zmp:0000000760 col2a1a col2a1a scara5 scara5 c1qtnf1 c1qtnf1 c1qtnf6a c1qtnf6a col18a1a col18a1a col11a1a col11a1a c1qtnf6b c1qtnf6b colec11 colec11 mbl2 mbl2 col6a2 col6a2 colec12 colec12 Q1LYI5_DANRE Q1LYI5_DANRE otol1b otol1b LOC101886389 LOC101886389 c1qtnf5 c1qtnf5 col9a3 col9a3 col11a1b col11a1b c1ql3b c1ql3b col9a2 col9a2 col14a1a col14a1a colq colq scara3 scara3 col5a2b col5a2b X1WCX6_DANRE X1WCX6_DANRE zgc:113232 zgc:113232 col1a2 col1a2 hbl2 hbl2 col9a1b col9a1b c1ql2 c1ql2 col4a4 col4a4 col8a1b col8a1b col10a1b col10a1b COLEC10 COLEC10 marco marco c1qtnf2 c1qtnf2 col17a1a col17a1a col11a2 col11a2 col8a2 col8a2 otol1a otol1a c1qtnf9 c1qtnf9 hbl1 hbl1 ccbe1 ccbe1 emilin1a emilin1a c1qtnf7 c1qtnf7 col6a1 col6a1 col28a1a col28a1a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
col28a2aCollagen, type XXVIII, alpha 2a. (1208 aa)
zmp:0000000760Zmp:0000000760. (780 aa)
col2a1aCollagen, type II, alpha 1a. (1491 aa)
scara5Scavenger receptor class A member 5; Ferritin receptor that mediates non-transferrin-dependent delivery of iron. Mediates cellular uptake of ferritin-bound iron by stimulating ferritin endocytosis from the cell surface with consequent iron delivery within the cell. Delivery of iron to cells by ferritin is required for the development of specific cell types, suggesting the existence of cell type-specific mechanisms of iron traffic in organogenesis, which alternatively utilize transferrin or non- transferrin iron delivery pathways. (499 aa)
c1qtnf1C1q and TNF-related 1. (267 aa)
c1qtnf6aC1q and TNF-related 6a. (241 aa)
col18a1aCollagen type XVIII alpha 1 chain a. (1383 aa)
col11a1aCollagen, type XI, alpha 1a. (1813 aa)
c1qtnf6bC1q and TNF-related 6b. (244 aa)
colec11Collectin-11; Lectin that plays a role in innate immunity, apoptosis and embryogenesis. Calcium-dependent lectin that binds self and non-self glycoproteins presenting high mannose oligosaccharides with at least one terminal alpha-1,2-linked mannose epitope. Primarily recognizes the terminal disaccharide of the glycan. Also recognizes a subset of fucosylated glycans and lipopolysaccharides. Plays a role in innate immunity through its ability to bind non-self sugars presented by microorganisms and to activate the complement through the recruitment of MAPS1. Also plays a role in apoptosis [...] (271 aa)
mbl2Mannose-binding lectin 2. (251 aa)
col6a2Collagen, type VI, alpha 2. (1015 aa)
colec12Collectin-12; Scavenger receptor that displays several functions associated with host defense. Binds to carbohydrates (By similarity). (720 aa)
Q1LYI5_DANRESi:ch211-106n13.3. (873 aa)
otol1bOtolin 1b. (494 aa)
LOC101886389C1q domain-containing protein. (469 aa)
c1qtnf5C1q and tumor necrosis factor related protein 5. (248 aa)
col9a3Collagen, type IX, alpha 3. (679 aa)
col11a1bCollagen, type XI, alpha 1b. (1815 aa)
c1ql3bComplement component 1, q subcomponent-like 3b. (246 aa)
col9a2Procollagen, type IX, alpha 2. (691 aa)
col14a1aCollagen, type XIV, alpha 1a. (1864 aa)
colqCollagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase. (455 aa)
scara3Scavenger receptor class A, member 3. (586 aa)
col5a2bCollagen, type V, alpha 2b. (1499 aa)
X1WCX6_DANRESi:ch211-196i2.1. (1573 aa)
zgc:113232Zgc:113232. (637 aa)
col1a2Collagen, type I, alpha 2. (1352 aa)
hbl2Hexose-binding lectin 2. (253 aa)
col9a1bCollagen, type IX, alpha 1b. (681 aa)
c1ql2Complement component 1, q subcomponent-like 2. (248 aa)
col4a4Collagen, type IV, alpha 4. (1670 aa)
col8a1bCollagen, type VIII, alpha 1b. (733 aa)
col10a1bCollagen, type X, alpha 1b. (659 aa)
COLEC10Si:ch211-93i7.4. (271 aa)
marcoMacrophage receptor with collagenous structure. (450 aa)
c1qtnf2C1q and TNF-related 2. (292 aa)
col17a1aCollagen, type XVII, alpha 1a. (1408 aa)
col11a2Collagen, type XI, alpha 2. (1803 aa)
col8a2Collagen, type VIII, alpha 2. (686 aa)
otol1aOtolin-1-A; Collagen-like protein, which provides an organic scaffold for otoliths onto the sensory epithelium of the inner ear. Acts as a scaffold for biomineralization by sequestering calcium ; Belongs to the OTOL1 family. (489 aa)
c1qtnf9C1q and TNF-related 9. (339 aa)
hbl1Zmp:0000000729. (254 aa)
ccbe1Collagen and calcium-binding EGF domain-containing protein 1; Required for lymphangioblast budding and angiogenic sprouting from venous endothelium during embryogenesis. Necessary for lymphangiogenesis, but is probably not part of either the vegfc-vegfr3 signaling or sox18-prox1 transcriptional pathways. Belongs to the CCBE1 family. (401 aa)
emilin1aElastin microfibril interfacer 1a. (1014 aa)
c1qtnf7C1q and TNF-related 7. (286 aa)
col6a1Collagen, type VI, alpha 1. (1007 aa)
col28a1aCollagen, type XXVIII, alpha 1a. (1170 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.