STRINGSTRING
X1WFB5_DANRE X1WFB5_DANRE fam193a fam193a cul4a cul4a cul3b cul3b cul4b cul4b cul2 cul2 cul1a cul1a cul5b cul5b cul5a cul5a vps51 vps51 cul3a cul3a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
X1WFB5_DANRESi:ch211-147k10.5. (341 aa)
fam193aFamily with sequence similarity 193 member A. (1476 aa)
cul4aCullin 4A; Belongs to the cullin family. (635 aa)
cul3bCullin 3b; Belongs to the cullin family. (766 aa)
cul4bCullin 4B; Belongs to the cullin family. (864 aa)
cul2Cullin 2; Belongs to the cullin family. (745 aa)
cul1aCullin 1a; Belongs to the cullin family. (777 aa)
cul5bCullin 5b; Belongs to the cullin family. (795 aa)
cul5aCullin 5a; Belongs to the cullin family. (780 aa)
vps51Vacuolar protein sorting-associated protein 51 homolog; Involved in retrograde transport from early and late endosomes to the late Golgi. The GARP complex is required for the maintenance of protein retrieval from endosomes to the TGN, acid hydrolase sorting, lysosome function, endosomal cholesterol traffic and autophagy. Acts as component of the EARP complex that is involved in endocytic recycling (By similarity). (827 aa)
cul3aCullin 3a; Belongs to the cullin family. (774 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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