STRINGSTRING
sox1b sox1b sox19a sox19a sox14 sox14 sox2 sox2 sox1a sox1a sox3 sox3 sox19b sox19b sox21b sox21b
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sox1bTranscription factor Sox-1b; Transcriptional activator. (340 aa)
sox19aTranscription factor Sox-19a; Transcriptional activator. (297 aa)
sox14Transcription factor Sox-14; Acts as a negative regulator of transcription. May function as a switch in neuronal development (By similarity). (238 aa)
sox2Transcription factor Sox-2; Transcriptional activator. May function as a switch in neuronal development (By similarity). Downstream SRRT target that mediates the promotion of neural stem cell self-renewal (By similarity). (315 aa)
sox1aTranscription factor Sox-1a; Transcriptional activator. (336 aa)
sox3Transcription factor Sox-3; Transcriptional activator. (300 aa)
sox19bTranscription factor Sox-19b; Transcriptional activator. (293 aa)
sox21bTranscription factor Sox-21-B; Acts as a negative regulator of transcription. (245 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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