10 items (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	psma6a	Proteasome subunit alpha type. (246 aa)
	psma1	Proteasome subunit alpha type. (262 aa)
	si:rp71-45k5.4	Proteasome subunit alpha type. (234 aa)
	psma3	Proteasome subunit alpha type. (255 aa)
	psma4	Proteasome subunit alpha type. (261 aa)
	psma6l	Proteasome subunit alpha type. (252 aa)
	psma2	Proteasome subunit alpha type. (234 aa)
	psma6b	Proteasome subunit alpha type. (246 aa)
	psma5	Proteasome subunit alpha type. (241 aa)
	psma8	Proteasome subunit alpha type. (251 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
psma1	psma2	ENSDARP00000134179	ENSDARP00000058679	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.993
psma1	psma3	ENSDARP00000134179	ENSDARP00000108560	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psma4	ENSDARP00000134179	ENSDARP00000067511	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psma5	ENSDARP00000134179	ENSDARP00000009133	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psma6a	ENSDARP00000134179	ENSDARP00000006320	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.986
psma1	psma6b	ENSDARP00000134179	ENSDARP00000028134	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.986
psma1	psma6l	ENSDARP00000134179	ENSDARP00000064461	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.985
psma1	psma8	ENSDARP00000134179	ENSDARP00000006445	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	si:rp71-45k5.4	ENSDARP00000134179	ENSDARP00000127697	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.993
psma2	psma1	ENSDARP00000058679	ENSDARP00000134179	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.993
psma2	psma3	ENSDARP00000058679	ENSDARP00000108560	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.992
psma2	psma4	ENSDARP00000058679	ENSDARP00000067511	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.993
psma2	psma5	ENSDARP00000058679	ENSDARP00000009133	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.993
psma2	psma6a	ENSDARP00000058679	ENSDARP00000006320	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.959
psma2	psma6b	ENSDARP00000058679	ENSDARP00000028134	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.959
psma2	psma6l	ENSDARP00000058679	ENSDARP00000064461	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.956
psma2	psma8	ENSDARP00000058679	ENSDARP00000006445	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.991
psma2	si:rp71-45k5.4	ENSDARP00000058679	ENSDARP00000127697	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.913
psma3	psma1	ENSDARP00000108560	ENSDARP00000134179	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma3	psma2	ENSDARP00000108560	ENSDARP00000058679	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.992

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