(8 nodes) Cdc42 effector network (Danio rerio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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Others

textmining

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protein homology

Your Input:
	cdc42ep1a	CDC42 effector protein (Rho GTPase-binding) 1a. (351 aa)
	cdc42ep3	CDC42 effector protein (Rho GTPase-binding) 3. (300 aa)
	cdc42ep2	CDC42 effector protein (Rho GTPase-binding) 2. (247 aa)
	zgc:154093	Zgc:154093. (271 aa)
	cdc42ep5	CDC42 effector protein (Rho GTPase-binding) 5. (295 aa)
	cdc42ep1b	CDC42 effector protein (Rho GTPase-binding) 1b. (306 aa)
	cdc42ep4b	CDC42 effector protein (Rho GTPase-binding) 4b. (336 aa)
	cdc42ep4a	CDC42 effector protein (Rho GTPase-binding) 4a. (335 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cdc42ep1a	cdc42ep2	ENSDARP00000127202	ENSDARP00000070562	CDC42 effector protein (Rho GTPase-binding) 1a.	CDC42 effector protein (Rho GTPase-binding) 2.	0.543
cdc42ep1a	cdc42ep3	ENSDARP00000127202	ENSDARP00000069193	CDC42 effector protein (Rho GTPase-binding) 1a.	CDC42 effector protein (Rho GTPase-binding) 3.	0.500
cdc42ep1a	cdc42ep4b	ENSDARP00000127202	ENSDARP00000127185	CDC42 effector protein (Rho GTPase-binding) 1a.	CDC42 effector protein (Rho GTPase-binding) 4b.	0.404
cdc42ep2	cdc42ep1a	ENSDARP00000070562	ENSDARP00000127202	CDC42 effector protein (Rho GTPase-binding) 2.	CDC42 effector protein (Rho GTPase-binding) 1a.	0.543
cdc42ep2	cdc42ep3	ENSDARP00000070562	ENSDARP00000069193	CDC42 effector protein (Rho GTPase-binding) 2.	CDC42 effector protein (Rho GTPase-binding) 3.	0.465
cdc42ep2	cdc42ep4b	ENSDARP00000070562	ENSDARP00000127185	CDC42 effector protein (Rho GTPase-binding) 2.	CDC42 effector protein (Rho GTPase-binding) 4b.	0.548
cdc42ep2	cdc42ep5	ENSDARP00000070562	ENSDARP00000084654	CDC42 effector protein (Rho GTPase-binding) 2.	CDC42 effector protein (Rho GTPase-binding) 5.	0.786
cdc42ep3	cdc42ep1a	ENSDARP00000069193	ENSDARP00000127202	CDC42 effector protein (Rho GTPase-binding) 3.	CDC42 effector protein (Rho GTPase-binding) 1a.	0.500
cdc42ep3	cdc42ep2	ENSDARP00000069193	ENSDARP00000070562	CDC42 effector protein (Rho GTPase-binding) 3.	CDC42 effector protein (Rho GTPase-binding) 2.	0.465
cdc42ep3	cdc42ep4b	ENSDARP00000069193	ENSDARP00000127185	CDC42 effector protein (Rho GTPase-binding) 3.	CDC42 effector protein (Rho GTPase-binding) 4b.	0.500
cdc42ep3	cdc42ep5	ENSDARP00000069193	ENSDARP00000084654	CDC42 effector protein (Rho GTPase-binding) 3.	CDC42 effector protein (Rho GTPase-binding) 5.	0.768
cdc42ep4b	cdc42ep1a	ENSDARP00000127185	ENSDARP00000127202	CDC42 effector protein (Rho GTPase-binding) 4b.	CDC42 effector protein (Rho GTPase-binding) 1a.	0.404
cdc42ep4b	cdc42ep2	ENSDARP00000127185	ENSDARP00000070562	CDC42 effector protein (Rho GTPase-binding) 4b.	CDC42 effector protein (Rho GTPase-binding) 2.	0.548
cdc42ep4b	cdc42ep3	ENSDARP00000127185	ENSDARP00000069193	CDC42 effector protein (Rho GTPase-binding) 4b.	CDC42 effector protein (Rho GTPase-binding) 3.	0.500
cdc42ep5	cdc42ep2	ENSDARP00000084654	ENSDARP00000070562	CDC42 effector protein (Rho GTPase-binding) 5.	CDC42 effector protein (Rho GTPase-binding) 2.	0.786
cdc42ep5	cdc42ep3	ENSDARP00000084654	ENSDARP00000069193	CDC42 effector protein (Rho GTPase-binding) 5.	CDC42 effector protein (Rho GTPase-binding) 3.	0.768

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