(13 nodes) CXC Chemokine domain network (Danio rerio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cxcl11.6	C-X-C motif chemokine 11-6; Ligand for cxcr3.2. Chemotactic for macrophages. (121 aa)
	cxcl8a	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family. (98 aa)
	LOC100334604	SCY domain-containing protein. (121 aa)
	cxcl11.5	Chemokine (C-X-C motif) ligand 11, duplicate 5. (106 aa)
	cxcl19	Chemokine (C-X-C motif) ligand 19. (101 aa)
	cxcl11.1	C-X-C motif chemokine 11-1; Ligand for cxcr3.2. Chemotactic for macrophages. (94 aa)
	LOC567656	SCY domain-containing protein. (96 aa)
	cxcl8b.1	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family. (118 aa)
	cxcl11.8	Chemokine (C-X-C motif) ligand 11, duplicate 8. (102 aa)
	cxcl11.7	C-X-C motif chemokine. (121 aa)
	cxcl20	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family. (147 aa)
	cxcl12b	Chemokine (C-X-C motif) ligand 12B (Stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family. (97 aa)
	cxcl12a	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family. (99 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100334604	LOC567656	ENSDARP00000136965	ENSDARP00000133434	SCY domain-containing protein.	SCY domain-containing protein.	0.410
LOC100334604	cxcl11.1	ENSDARP00000136965	ENSDARP00000135444	SCY domain-containing protein.	C-X-C motif chemokine 11-1; Ligand for cxcr3.2. Chemotactic for macrophages.	0.400
LOC100334604	cxcl11.5	ENSDARP00000136965	ENSDARP00000136838	SCY domain-containing protein.	Chemokine (C-X-C motif) ligand 11, duplicate 5.	0.648
LOC100334604	cxcl11.6	ENSDARP00000136965	ENSDARP00000112794	SCY domain-containing protein.	C-X-C motif chemokine 11-6; Ligand for cxcr3.2. Chemotactic for macrophages.	0.405
LOC100334604	cxcl11.8	ENSDARP00000136965	ENSDARP00000123477	SCY domain-containing protein.	Chemokine (C-X-C motif) ligand 11, duplicate 8.	0.420
LOC100334604	cxcl12a	ENSDARP00000136965	ENSDARP00000053945	SCY domain-containing protein.	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	0.722
LOC100334604	cxcl12b	ENSDARP00000136965	ENSDARP00000071878	SCY domain-containing protein.	Chemokine (C-X-C motif) ligand 12B (Stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	0.468
LOC100334604	cxcl19	ENSDARP00000136965	ENSDARP00000135787	SCY domain-containing protein.	Chemokine (C-X-C motif) ligand 19.	0.679
LOC100334604	cxcl20	ENSDARP00000136965	ENSDARP00000102486	SCY domain-containing protein.	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.	0.499
LOC100334604	cxcl8a	ENSDARP00000136965	ENSDARP00000137520	SCY domain-containing protein.	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.	0.625
LOC100334604	cxcl8b.1	ENSDARP00000136965	ENSDARP00000131403	SCY domain-containing protein.	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.	0.659
LOC567656	LOC100334604	ENSDARP00000133434	ENSDARP00000136965	SCY domain-containing protein.	SCY domain-containing protein.	0.410
LOC567656	cxcl11.1	ENSDARP00000133434	ENSDARP00000135444	SCY domain-containing protein.	C-X-C motif chemokine 11-1; Ligand for cxcr3.2. Chemotactic for macrophages.	0.400
LOC567656	cxcl11.5	ENSDARP00000133434	ENSDARP00000136838	SCY domain-containing protein.	Chemokine (C-X-C motif) ligand 11, duplicate 5.	0.412
LOC567656	cxcl11.6	ENSDARP00000133434	ENSDARP00000112794	SCY domain-containing protein.	C-X-C motif chemokine 11-6; Ligand for cxcr3.2. Chemotactic for macrophages.	0.412
LOC567656	cxcl11.8	ENSDARP00000133434	ENSDARP00000123477	SCY domain-containing protein.	Chemokine (C-X-C motif) ligand 11, duplicate 8.	0.413
LOC567656	cxcl12a	ENSDARP00000133434	ENSDARP00000053945	SCY domain-containing protein.	Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	0.709
LOC567656	cxcl12b	ENSDARP00000133434	ENSDARP00000071878	SCY domain-containing protein.	Chemokine (C-X-C motif) ligand 12B (Stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.	0.442
LOC567656	cxcl19	ENSDARP00000133434	ENSDARP00000135787	SCY domain-containing protein.	Chemokine (C-X-C motif) ligand 19.	0.679
LOC567656	cxcl20	ENSDARP00000133434	ENSDARP00000102486	SCY domain-containing protein.	Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.	0.499

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