(9 nodes) Gelsolin-like domain superfamily network (Danio rerio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sec24b	SEC24 homolog B, COPII coat complex component. (1184 aa)
	sec24d	SEC24 homolog D, COPII coat complex component. (1030 aa)
	vill	Villin-like. (850 aa)
	vil1	Villin 1. (834 aa)
	scinlb	Scinderin-like b. (720 aa)
	sec24a	SEC24 homolog A, COPII coat complex component. (1096 aa)
	avil	Zgc:136857. (811 aa)
	sec24c	SEC24 homolog C, COPII coat complex component. (1248 aa)
	sec23a	Protein transport protein Sec23A; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex. Belongs to the SEC23/SEC24 family. SEC23 subfamily. (765 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
sec23a	sec24a	ENSDARP00000137308	ENSDARP00000130391	Protein transport protein Sec23A; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex. Belongs to the SEC23/SEC24 family. SEC23 subfamily.	SEC24 homolog A, COPII coat complex component.	0.959
sec23a	sec24b	ENSDARP00000137308	ENSDARP00000097487	Protein transport protein Sec23A; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex. Belongs to the SEC23/SEC24 family. SEC23 subfamily.	SEC24 homolog B, COPII coat complex component.	0.942
sec23a	sec24c	ENSDARP00000137308	ENSDARP00000135644	Protein transport protein Sec23A; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex. Belongs to the SEC23/SEC24 family. SEC23 subfamily.	SEC24 homolog C, COPII coat complex component.	0.956
sec23a	sec24d	ENSDARP00000137308	ENSDARP00000035564	Protein transport protein Sec23A; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex. Belongs to the SEC23/SEC24 family. SEC23 subfamily.	SEC24 homolog D, COPII coat complex component.	0.961
sec24a	sec23a	ENSDARP00000130391	ENSDARP00000137308	SEC24 homolog A, COPII coat complex component.	Protein transport protein Sec23A; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex. Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.959
sec24a	sec24b	ENSDARP00000130391	ENSDARP00000097487	SEC24 homolog A, COPII coat complex component.	SEC24 homolog B, COPII coat complex component.	0.561
sec24a	sec24c	ENSDARP00000130391	ENSDARP00000135644	SEC24 homolog A, COPII coat complex component.	SEC24 homolog C, COPII coat complex component.	0.935
sec24a	sec24d	ENSDARP00000130391	ENSDARP00000035564	SEC24 homolog A, COPII coat complex component.	SEC24 homolog D, COPII coat complex component.	0.928
sec24b	sec23a	ENSDARP00000097487	ENSDARP00000137308	SEC24 homolog B, COPII coat complex component.	Protein transport protein Sec23A; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex. Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.942
sec24b	sec24a	ENSDARP00000097487	ENSDARP00000130391	SEC24 homolog B, COPII coat complex component.	SEC24 homolog A, COPII coat complex component.	0.561
sec24b	sec24c	ENSDARP00000097487	ENSDARP00000135644	SEC24 homolog B, COPII coat complex component.	SEC24 homolog C, COPII coat complex component.	0.861
sec24b	sec24d	ENSDARP00000097487	ENSDARP00000035564	SEC24 homolog B, COPII coat complex component.	SEC24 homolog D, COPII coat complex component.	0.908
sec24c	sec23a	ENSDARP00000135644	ENSDARP00000137308	SEC24 homolog C, COPII coat complex component.	Protein transport protein Sec23A; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex. Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.956
sec24c	sec24a	ENSDARP00000135644	ENSDARP00000130391	SEC24 homolog C, COPII coat complex component.	SEC24 homolog A, COPII coat complex component.	0.935
sec24c	sec24b	ENSDARP00000135644	ENSDARP00000097487	SEC24 homolog C, COPII coat complex component.	SEC24 homolog B, COPII coat complex component.	0.861
sec24c	sec24d	ENSDARP00000135644	ENSDARP00000035564	SEC24 homolog C, COPII coat complex component.	SEC24 homolog D, COPII coat complex component.	0.890
sec24d	sec23a	ENSDARP00000035564	ENSDARP00000137308	SEC24 homolog D, COPII coat complex component.	Protein transport protein Sec23A; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex. Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.961
sec24d	sec24a	ENSDARP00000035564	ENSDARP00000130391	SEC24 homolog D, COPII coat complex component.	SEC24 homolog A, COPII coat complex component.	0.928
sec24d	sec24b	ENSDARP00000035564	ENSDARP00000097487	SEC24 homolog D, COPII coat complex component.	SEC24 homolog B, COPII coat complex component.	0.908
sec24d	sec24c	ENSDARP00000035564	ENSDARP00000135644	SEC24 homolog D, COPII coat complex component.	SEC24 homolog C, COPII coat complex component.	0.890

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About