24 items (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	psmb11b	Proteasome 20S subunit beta 11b. (362 aa)
	psmb10	Proteasome subunit beta. (276 aa)
	psmb8a	Proteasome subunit beta. (271 aa)
	psmb6	Proteasome subunit beta. (232 aa)
	psmb3	Proteasome subunit beta. (205 aa)
	psmb5	Proteasome subunit beta. (269 aa)
	psma3	Proteasome subunit alpha type. (255 aa)
	psmb7	Proteasome subunit beta. (277 aa)
	psmb11a	Novel protein similar to proteasomes. (375 aa)
	psma1	Proteasome subunit alpha type. (262 aa)
	si:rp71-45k5.4	Proteasome subunit alpha type. (234 aa)
	psma6b	Proteasome subunit alpha type. (246 aa)
	psmb2	Proteasome subunit beta. (199 aa)
	psmb4	Proteasome subunit beta; Belongs to the peptidase T1B family. (256 aa)
	psmb1	Proteasome subunit beta. (237 aa)
	psma8	Proteasome subunit alpha type. (251 aa)
	psma5	Proteasome subunit alpha type. (241 aa)
	psma6a	Proteasome subunit alpha type. (246 aa)
	psmb12	Proteasome subunit beta. (217 aa)
	psmb13a	Proteasome subunit beta. (281 aa)
	psmb9a	Proteasome subunit beta. (218 aa)
	psma2	Proteasome subunit alpha type. (234 aa)
	psma6l	Proteasome subunit alpha type. (252 aa)
	psma4	Proteasome subunit alpha type. (261 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
psma1	psma2	ENSDARP00000134179	ENSDARP00000058679	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.993
psma1	psma3	ENSDARP00000134179	ENSDARP00000108560	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psma4	ENSDARP00000134179	ENSDARP00000067511	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psma5	ENSDARP00000134179	ENSDARP00000009133	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psma6a	ENSDARP00000134179	ENSDARP00000006320	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.986
psma1	psma6b	ENSDARP00000134179	ENSDARP00000028134	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.986
psma1	psma6l	ENSDARP00000134179	ENSDARP00000064461	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.985
psma1	psma8	ENSDARP00000134179	ENSDARP00000006445	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
psma1	psmb1	ENSDARP00000134179	ENSDARP00000011778	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma1	psmb10	ENSDARP00000134179	ENSDARP00000090716	Proteasome subunit alpha type.	Proteasome subunit beta.	0.987
psma1	psmb11a	ENSDARP00000134179	ENSDARP00000151058	Proteasome subunit alpha type.	Novel protein similar to proteasomes.	0.952
psma1	psmb11b	ENSDARP00000134179	ENSDARP00000089043	Proteasome subunit alpha type.	Proteasome 20S subunit beta 11b.	0.952
psma1	psmb12	ENSDARP00000134179	ENSDARP00000001845	Proteasome subunit alpha type.	Proteasome subunit beta.	0.986
psma1	psmb13a	ENSDARP00000134179	ENSDARP00000001256	Proteasome subunit alpha type.	Proteasome subunit beta.	0.979
psma1	psmb2	ENSDARP00000134179	ENSDARP00000041113	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma1	psmb3	ENSDARP00000134179	ENSDARP00000013624	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
psma1	psmb4	ENSDARP00000134179	ENSDARP00000117990	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
psma1	psmb5	ENSDARP00000134179	ENSDARP00000099755	Proteasome subunit alpha type.	Proteasome subunit beta.	0.994
psma1	psmb6	ENSDARP00000134179	ENSDARP00000025226	Proteasome subunit alpha type.	Proteasome subunit beta.	0.995
psma1	psmb7	ENSDARP00000134179	ENSDARP00000112303	Proteasome subunit alpha type.	Proteasome subunit beta.	0.991

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