(9 nodes) ABC-2 type transporter network (Danio rerio)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	abcg2c	ATP-binding cassette, sub-family G (WHITE), member 2c. (634 aa)
	abcg5	ATP-binding cassette, sub-family G (WHITE), member 5. (652 aa)
	abcg1	ATP-binding cassette, sub-family G (WHITE), member 1. (673 aa)
	abcg2b	ATP-binding cassette, sub-family G (WHITE), member 2b. (618 aa)
	abcg4b	ATP-binding cassette, sub-family G (WHITE), member 4b. (644 aa)
	abch1	ATP-binding cassette, sub-family H, member 1. (705 aa)
	abcg4a	ATP-binding cassette, sub-family G (WHITE), member 4a. (641 aa)
	abcg2a	ATP-binding cassette, sub-family G (WHITE), member 2a. (643 aa)
	abcg2d	ATP-binding cassette transporter sub-family G member 2d. (613 aa)

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
abcg1	abcg5	ENSDARP00000087241	ENSDARP00000086278	ATP-binding cassette, sub-family G (WHITE), member 1.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.690
abcg1	abch1	ENSDARP00000087241	ENSDARP00000114137	ATP-binding cassette, sub-family G (WHITE), member 1.	ATP-binding cassette, sub-family H, member 1.	0.406
abcg2a	abcg5	ENSDARP00000140421	ENSDARP00000086278	ATP-binding cassette, sub-family G (WHITE), member 2a.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.833
abcg2a	abch1	ENSDARP00000140421	ENSDARP00000114137	ATP-binding cassette, sub-family G (WHITE), member 2a.	ATP-binding cassette, sub-family H, member 1.	0.546
abcg2b	abcg5	ENSDARP00000126778	ENSDARP00000086278	ATP-binding cassette, sub-family G (WHITE), member 2b.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.671
abcg2b	abch1	ENSDARP00000126778	ENSDARP00000114137	ATP-binding cassette, sub-family G (WHITE), member 2b.	ATP-binding cassette, sub-family H, member 1.	0.436
abcg2c	abcg5	ENSDARP00000033222	ENSDARP00000086278	ATP-binding cassette, sub-family G (WHITE), member 2c.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.623
abcg2c	abch1	ENSDARP00000033222	ENSDARP00000114137	ATP-binding cassette, sub-family G (WHITE), member 2c.	ATP-binding cassette, sub-family H, member 1.	0.441
abcg2d	abcg5	ENSDARP00000024285	ENSDARP00000086278	ATP-binding cassette transporter sub-family G member 2d.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.617
abcg2d	abch1	ENSDARP00000024285	ENSDARP00000114137	ATP-binding cassette transporter sub-family G member 2d.	ATP-binding cassette, sub-family H, member 1.	0.424
abcg4a	abcg4b	ENSDARP00000116517	ENSDARP00000102351	ATP-binding cassette, sub-family G (WHITE), member 4a.	ATP-binding cassette, sub-family G (WHITE), member 4b.	0.902
abcg4a	abcg5	ENSDARP00000116517	ENSDARP00000086278	ATP-binding cassette, sub-family G (WHITE), member 4a.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.683
abcg4a	abch1	ENSDARP00000116517	ENSDARP00000114137	ATP-binding cassette, sub-family G (WHITE), member 4a.	ATP-binding cassette, sub-family H, member 1.	0.427
abcg4b	abcg4a	ENSDARP00000102351	ENSDARP00000116517	ATP-binding cassette, sub-family G (WHITE), member 4b.	ATP-binding cassette, sub-family G (WHITE), member 4a.	0.902
abcg4b	abcg5	ENSDARP00000102351	ENSDARP00000086278	ATP-binding cassette, sub-family G (WHITE), member 4b.	ATP-binding cassette, sub-family G (WHITE), member 5.	0.602
abcg4b	abch1	ENSDARP00000102351	ENSDARP00000114137	ATP-binding cassette, sub-family G (WHITE), member 4b.	ATP-binding cassette, sub-family H, member 1.	0.405
abcg5	abcg1	ENSDARP00000086278	ENSDARP00000087241	ATP-binding cassette, sub-family G (WHITE), member 5.	ATP-binding cassette, sub-family G (WHITE), member 1.	0.690
abcg5	abcg2a	ENSDARP00000086278	ENSDARP00000140421	ATP-binding cassette, sub-family G (WHITE), member 5.	ATP-binding cassette, sub-family G (WHITE), member 2a.	0.833
abcg5	abcg2b	ENSDARP00000086278	ENSDARP00000126778	ATP-binding cassette, sub-family G (WHITE), member 5.	ATP-binding cassette, sub-family G (WHITE), member 2b.	0.671
abcg5	abcg2c	ENSDARP00000086278	ENSDARP00000033222	ATP-binding cassette, sub-family G (WHITE), member 5.	ATP-binding cassette, sub-family G (WHITE), member 2c.	0.623

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