STRINGSTRING
ptchd1 ptchd1 NPC1L1 NPC1L1 F1QRU8_DANRE F1QRU8_DANRE hmgcra hmgcra ptch2 ptch2 ptch1 ptch1 ptchd4 ptchd4 Ptchd3a Ptchd3a scap scap hmgcrb hmgcrb
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ptchd1Patched domain-containing protein 1. (887 aa)
NPC1L1NPC1 like intracellular cholesterol transporter 1. (1085 aa)
F1QRU8_DANRESi:ch211-250m6.7. (869 aa)
hmgcra3-hydroxy-3-methylglutaryl coenzyme A reductase. (884 aa)
ptch2Protein patched homolog 1; Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal (By similarity). Belongs to the patched family. (1442 aa)
ptch1Protein patched homolog 1. (1475 aa)
ptchd4Patched domain-containing protein 1. (897 aa)
Ptchd3aSSD domain-containing protein. (667 aa)
scapSREBF chaperone. (1245 aa)
hmgcrb3-hydroxy-3-methylglutaryl coenzyme A reductase. (844 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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