STRINGSTRING
sergef sergef kcnj11 kcnj11 tph1a tph1a nucb2a nucb2a rps13 rps13 myf6 myf6 tnni2a.4 tnni2a.4 tnni2a.3 tnni2a.3 myog myog myod1 myod1 tnni2a.1 tnni2a.1 otog otog pik3c2a pik3c2a tnni2a.2 tnni2a.2 abcc8 abcc8 scaf1 scaf1 tnni2b.2 tnni2b.2 myf5 myf5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sergefSecretion-regulating guanine nucleotide exchange factor. (397 aa)
kcnj11Potassium inwardly-rectifying channel, subfamily J, member 11. (381 aa)
tph1aTryptophan hydroxylase 1 (tryptophan 5-monooxygenase) a. (483 aa)
nucb2aNucleobindin 2a. (496 aa)
rps13Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
myf6Myogenic factor 6; Involved in muscle differentiation (myogenic factor). Induces fibroblasts to differentiate into myoblasts. Probable sequence specific DNA-binding protein (By similarity). (239 aa)
tnni2a.4Troponin I type 2a (skeletal, fast), tandem duplicate 4. (176 aa)
tnni2a.3Troponin I type 2a (skeletal, fast), tandem duplicate 3. (176 aa)
myogMyogenin. (256 aa)
myod1Myoblast determination protein 1 homolog; May act as a transcriptional activator that promotes transcription of muscle-specific target genes and plays a role in muscle differentiation. (275 aa)
tnni2a.1Troponin I type 2a (skeletal, fast), tandem duplicate 1. (178 aa)
otogOtogelin. (3120 aa)
pik3c2aPhosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha; Belongs to the PI3/PI4-kinase family. (1725 aa)
tnni2a.2Troponin I type 2a (skeletal, fast), tandem duplicate 2. (178 aa)
abcc8ATP-binding cassette, sub-family C (CFTR/MRP), member 8. (1581 aa)
scaf1SR-related CTD-associated factor 1. (1537 aa)
tnni2b.2Troponin I type 2b (skeletal, fast), tandem duplicate 2. (176 aa)
myf5Myogenic factor. (237 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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