STRINGSTRING
psma3 psma3 napsa napsa vim vim krt4 krt4 psmc3 psmc3 ctss2.2 ctss2.2 psmb2 psmb2 TXN TXN ctss1 ctss1 acta1b acta1b txn txn ctsba ctsba ctsd ctsd krt8 krt8 calr calr rcn1 rcn1 agr2 agr2 ctss2.1 ctss2.1 krt18a.1 krt18a.1 calua calua psmb4 psmb4 ube2kb ube2kb golgb1 golgb1 lamp1b lamp1b adam17b adam17b muc2.2 muc2.2 calr3a calr3a calr3b calr3b p4hb p4hb ctsbb ctsbb lmna lmna
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
psma3Proteasome subunit alpha type. (255 aa)
napsaNapsin A aspartic peptidase; Belongs to the peptidase A1 family. (412 aa)
vimVimentin; Belongs to the intermediate filament family. (455 aa)
krt4Keratin 4; Belongs to the intermediate filament family. (497 aa)
psmc3Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family. (404 aa)
ctss2.2Cathepsin S, ortholog 2, tandem duplicate 2; Belongs to the peptidase C1 family. (330 aa)
psmb2Proteasome subunit beta. (199 aa)
TXNThioredoxin; Belongs to the thioredoxin family. (108 aa)
ctss1Cathepsin S, ortholog 1; Belongs to the peptidase C1 family. (328 aa)
acta1bActin alpha 1, skeletal muscle b. (377 aa)
txnThioredoxin; Belongs to the thioredoxin family. (107 aa)
ctsbaCathepsin B, a; Belongs to the peptidase C1 family. (330 aa)
ctsdCtsd protein; Belongs to the peptidase A1 family. (398 aa)
krt8Keratin, type II cytoskeletal 8; Together with KRT19, helps to link the contractile apparatus to dystrophin at the costameres of striated muscle. (520 aa)
calrCalreticulin. (417 aa)
rcn1Reticulocalbin 1, EF-hand calcium-binding domain. (320 aa)
agr2Anterior gradient protein 2 homolog; Belongs to the AGR family. (171 aa)
ctss2.1Cathepsin S, ortholog2, tandem duplicate 1; Belongs to the peptidase C1 family. (330 aa)
krt18a.1Keratin, type I cytoskeletal 18; When phosphorylated, plays a role in filament reorganization. (431 aa)
caluaCalumenin-A; Involved in regulation of vitamin K-dependent carboxylation of multiple N-terminal glutamate residues. Seems to inhibit gamma- carboxylase ggcx. Binds 7 calcium ions with a low affinity (By similarity). (317 aa)
psmb4Proteasome subunit beta; Belongs to the peptidase T1B family. (256 aa)
ube2kbUbiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
golgb1Golgin B1. (3355 aa)
lamp1bLysosomal-associated membrane protein 1b. (253 aa)
adam17bADAM metallopeptidase domain 17b. (843 aa)
muc2.2Mucin 2.2, oligomeric mucus/gel-forming. (3829 aa)
calr3aCalreticulin. (418 aa)
calr3bCalreticulin. (417 aa)
p4hbProtein disulfide-isomerase. (509 aa)
ctsbbCathepsin Bb; Belongs to the peptidase C1 family. (327 aa)
lmnaLamin A; Belongs to the intermediate filament family. (675 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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