STRINGSTRING
acta1b acta1b cdh23 cdh23 pcdh15b pcdh15b eps8a eps8a pcdh15a pcdh15a rab8a rab8a ush1c ush1c vezt vezt ush2a ush2a rpgra rpgra
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
acta1bActin alpha 1, skeletal muscle b. (377 aa)
cdh23Cadherin-related 23. (2883 aa)
pcdh15bProtocadherin-related 15b. (1907 aa)
eps8aEpidermal growth factor receptor pathway substrate 8a. (804 aa)
pcdh15aProtocadherin-related 15a. (1796 aa)
rab8aRAB8A, member RAS oncogene family. (207 aa)
ush1cUsher syndrome 1C (Autosomal recessive, severe). (548 aa)
veztVezatin, adherens junctions transmembrane protein. (783 aa)
ush2aUsher syndrome 2A (autosomal recessive, mild). (5236 aa)
rpgraRetinitis pigmentosa GTPase regulator a. (1698 aa)
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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